http://statgen.us/api.php?action=feedcontributions&feedformat=atom&user=Suzanne 2026-04-05T20:05:21Z User contributions MediaWiki 1.26.2 http://statgen.us/index.php?title=Genassoc2019&diff=814 2019-04-02T14:01:36Z

<p>Suzanne: /* General Information */</p> <hr /> <div>__NOTITLE__<br /> <br /> <br /> <br /> =Genetic Association Course=<br /> With Application to Sequence and Genotype Data<br /> <br /> June 24-28, 2019<br /> <br /> Max Delbruck Center (MDC) for Molecular Medicine<br /> <br /> Berlin, Germany<br /> <br /> <br /> <br /> ==General Information==<br /> The eight Annual Berlin Genetic Association Course will be held at the MDC in Berlin from June 24-28, 2019. The goal of the course is to teach the course participants both theory and application of methods for population-based association analysis, with a concentration on the analysis of exome and whole genome sequence and genotype data.<br /> <br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels.<br /> <br /> The emphasis in this course is on strategies for genetic mapping of complex human traits. It will include theory as well as practical exercises. The exercises will be carried out using a variety of computer programs (PLINK, GenABEL, MACH, UNPHASED, EIGENSTRAT, Variant Association Tools (VAT), SEQPower and R, etc.) and with pencil and paper. The emphasis of this course is on the analysis of population-based whole genome and exome data including genotype and sequence data. TOPICS include: Association analysis of qualitative and quantitative traits; single marker and haplotype analysis; analysis of whole-genome association study data; complex trait rare variant association analysis of next-generation sequence data; data quality control for genotype and next-generation sequence data; haplotype reconstruction; tagSNP selection; controlling population admixture (genomic control, principal components analysis, etc); imputing genotype data from sequence and genotype data; detecting gene x gene and gene x environmental interactions; power and sample size estimation for both genotype and rare variant data; permutation (estimating empirical p-values); and false discovery rate (FDR). The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).<br /> <br /> <br /> Applications for the course are currently being accepted.<br /> <br /> ==More Information==<br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> email: [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Genetic%20Association%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> [https://statgen.research.bcm.edu/files/2019/schedule_berlin_genetic_association_course_2019.pdf Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_Genetic_Association_Course_Application_2019.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_genetic_association_flyer_2019.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=Genassoc2019&diff=813 2019-04-02T14:00:38Z

<p>Suzanne: /* General Information */</p> <hr /> <div>__NOTITLE__<br /> <br /> <br /> <br /> =Genetic Association Course=<br /> With Application to Sequence and Genotype Data<br /> <br /> June 24-28, 2019<br /> <br /> Max Delbruck Center (MDC) for Molecular Medicine<br /> <br /> Berlin, Germany<br /> <br /> <br /> <br /> ==General Information==<br /> The eight Annual Berlin Genetic Association Course will be held at the MDC in Berlin from June 24-28, 2019. The goal of the course is to teach the course participants both theory and application of methods for population-based association analysis, with a concentration on the analysis of exome and whole genome sequence and genotype data.<br /> <br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels.<br /> <br /> The emphasis in this course is on strategies for genetic mapping of complex human traits. It will include theory as well as practical exercises. The exercises will be carried out using a variety of computer programs (PLINK, GenABEL, MACH, UNPHASED, EIGENSTRAT, Variant Association Tools (VAT), SEQPower and R, etc.) and with pencil and paper. The emphasis of this course is on the analysis of population-based whole genome and exome data including genotype and sequence data. TOPICS include: Association analysis of qualitative and quantitative traits; single marker and haplotype analysis; analysis of whole-genome association study data; complex trait rare variant association analysis of next-generation sequence data; data quality control for genotype and next-generation sequence data; haplotype reconstruction; tagSNP selection; controlling population admixture (genomic control, principal components analysis, etc); imputing genotype data from sequence and genotype data; detecting gene x gene and gene x environmental interactions; power and sample size estimation for both genotype and rare variant data; permutation (estimating empirical p-values); and false discovery rate (FDR). The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).<br /> <br /> ==More Information==<br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> email: [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Genetic%20Association%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> [https://statgen.research.bcm.edu/files/2019/schedule_berlin_genetic_association_course_2019.pdf Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_Genetic_Association_Course_Application_2019.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_genetic_association_flyer_2019.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=ComplexNGS2019&diff=804 2019-02-18T21:35:18Z

<p>Suzanne: /* More Information */</p> <hr /> <div>__NOTITLE__<br /> <br /> =Complex Trait Analysis of Next Generation Sequence Data=<br /> November 11-15, 2019&lt;br /&gt;<br /> Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;<br /> Berlin, Germany<br /> <br /> ===General Information===<br /> The fifth annual course on Complex Trait Analysis of Next Generation Sequence Data will be held at the MDC in Berlin from November 11-15, 2019. The goal of the course is to teach both the theory and application of methods to analyze next-generation sequence (NGS) data for human complex traits. Attendees will learn how to design studies, call variants from NGS data, analysis of population-, trio- and family-based sequence data and evaluation of variant functionality. Analyses will include performing complex trait rare variant association analysis for population and trio data. Exercises will be carried out using a variety of computer programs (GATK, IGV, Polyphen2, PSEQ, SEQPower, SEQSpark and Variant Association Tools (VAT)). TOPICS will be include: sequence alignment, calling variants from NGS data, quality control of NGS data, association testing framework for quantitative and qualitative traits (fixed effects, random effects and mixed models), rare variant association methods, estimating power and sample size for rare variant association studies, imputation of rare variants and their analysis, and evaluating variant conservation and functionality.<br /> <br /> ===Instructors===<br /> The instructors for the course are [https://www.bcm.edu/research/labs/center-for-statistical-genetics/ Suzanne Leal] (Baylor College of Medicine) and [http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/ Michael Nothnagel] (University of Cologne).<br /> <br /> <br /> ===More Information===<br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels. The maximum number of participants is 35.<br /> <br /> Application deadline September 1, 2019<br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> <br /> email: [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> <br /> [https://statgen.research.bcm.edu/files/2019/schedule_berlin_complex_ngs_2019.pdf Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_NGS_Complex_Trait_Application_2019.html Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019//Berlin_NGS_complex_traits_course_flyer_2019.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=MediaWiki:Sidebar&diff=803 2019-02-18T21:19:25Z

<p>Suzanne: </p> <hr /> <div>* About<br /> ** mainpage|Center for Statistical Genetics<br /> * 2019 Courses<br /> ** ComplexNGS2019|NGS Analysis of Complex Traits<br /> ** Genassoc2019|Genetic Association<br /> ** Advgenemap2019|Advanced Gene Mapping<br /> <br /> * 2018 Courses<br /> ** Genassoc2018|Genetic Association<br /> ** ComplexNGS2018|NGS Analysis of Complex Traits<br /> ** Advgenemap2018|Advanced Gene Mapping<br /> * 2017 Courses<br /> ** NGSMendelian2017|NGS Analysis of Mendelian Traits<br /> ** Genassoc2017|Genetic Association<br /> ** ComplexNGS2017|NGS Analysis of Complex Traits<br /> ** Advgenemap2017|Advanced Gene Mapping<br /> * Previous Courses<br /> ** Previous_Courses|Previous Course Pages<br /> <br /> * Software Tutorials<br /> ** Tutorials|Tutorials<br /> <br /> * Course Files<br /> ** CourseExerciseScripts|Course Exercise Commands<br /> * Software<br /> ** http://tigerwang.org/software/kbac|KBAC<br /> ** https://github.com/statgenetics/mendelprob|MendelProb<br /> ** https://code.google.com/p/phenoman/|PhenoMan<br /> ** http://bioinformatics.org/simped/rare/|RarePedSim<br /> ** http://www.bioinformatics.org/rv-gdt/|RV-GDT<br /> ** http://bioinformatics.org/rv-tdt/wiki/|RV-TDT<br /> ** http://www.bioinformatics.org/seqlink/|SEQLinkage<br /> ** http://www.bioinformatics.org/spower/start|SEQPower<br /> ** https://github.com/statgenetics/seqspark|SEQSpark<br /> ** http://bioinformatics.org/simped|SimPed<br /> ** https://code.google.com/p/simrare/|SimRare<br /> ** http://varianttools.sourceforge.net/Association/HomePage|Variant Association Tools<br /> ** VMT|Variant Mendelian Tools<br /> <br /> &lt;!--** recentchanges-url|recentchanges--&gt;<br /> &lt;!--** randompage-url|randompage--&gt;<br /> &lt;!--** helppage|help--&gt;<br /> &lt;!--* SEARCH--&gt;<br /> &lt;!--* TOOLBOX--&gt;<br /> &lt;!--* LANGUAGES--&gt;</div>

Suzanne http://statgen.us/index.php?title=Genassoc2019&diff=802 2019-02-18T21:08:21Z

<p>Suzanne: /*   */</p> <hr /> <div>=Genetic Association Course=<br /> With Application to Sequence and Genotype Data<br /> <br /> June 24-28, 2019<br /> <br /> Max Delbruck Center (MDC) for Molecular Medicine<br /> <br /> Berlin, Germany<br /> <br /> <br /> ==General Information==<br /> The eight Annual Berlin Genetic Association Course will be held at the MDC in Berlin from June 24-28, 2019. The goal of the course is to teach the course participants both theory and application of methods for population-based association analysis, with a concentration on the analysis of exome and whole genome sequence and genotype data.<br /> <br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels.<br /> <br /> The emphasis in this course is on strategies for genetic mapping of complex human traits. It will include theory as well as practical exercises. The exercises will be carried out using a variety of computer programs (PLINK, GenABEL, MACH, UNPHASED, EIGENSTRAT, Variant Association Tools (VAT), SEQPower and R, etc.) and with pencil and paper. The emphasis of this course is on the analysis of population-based whole genome and exome data including genotype and sequence data. TOPICS include: Association analysis of qualitative and quantitative traits; single marker and haplotype analysis; analysis of whole-genome association study data; complex trait rare variant association analysis of next-generation sequence data; data quality control for genotype and next-generation sequence data; haplotype reconstruction; tagSNP selection; controlling population admixture (genomic control, principal components analysis, etc); imputing genotype data from sequence and genotype data; detecting gene x gene and gene x environmental interactions; power and sample size estimation for both genotype and rare variant data; permutation (estimating empirical p-values); and false discovery rate (FDR). The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).<br /> <br /> Application deadline April 1, 2019<br /> <br /> ===More Information===<br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> email: [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Genetic%20Association%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> [https://statgen.research.bcm.edu/files/2019/schedule_berlin_genetic_association_course_2019.pdf Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_Genetic_Association_Course_Application_2019.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_genetic_association_flyer_2019.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=Genassoc2019&diff=801 2019-02-18T21:07:56Z

<p>Suzanne: General Information</p> <hr /> <div>=Genetic Association Course=<br /> With Application to Sequence and Genotype Data<br /> <br /> June 24-28, 2019<br /> <br /> Max Delbruck Center (MDC) for Molecular Medicine<br /> <br /> Berlin, Germany<br /> <br /> = =<br /> ==General Information==<br /> The eight Annual Berlin Genetic Association Course will be held at the MDC in Berlin from June 24-28, 2019. The goal of the course is to teach the course participants both theory and application of methods for population-based association analysis, with a concentration on the analysis of exome and whole genome sequence and genotype data.<br /> <br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels.<br /> <br /> The emphasis in this course is on strategies for genetic mapping of complex human traits. It will include theory as well as practical exercises. The exercises will be carried out using a variety of computer programs (PLINK, GenABEL, MACH, UNPHASED, EIGENSTRAT, Variant Association Tools (VAT), SEQPower and R, etc.) and with pencil and paper. The emphasis of this course is on the analysis of population-based whole genome and exome data including genotype and sequence data. TOPICS include: Association analysis of qualitative and quantitative traits; single marker and haplotype analysis; analysis of whole-genome association study data; complex trait rare variant association analysis of next-generation sequence data; data quality control for genotype and next-generation sequence data; haplotype reconstruction; tagSNP selection; controlling population admixture (genomic control, principal components analysis, etc); imputing genotype data from sequence and genotype data; detecting gene x gene and gene x environmental interactions; power and sample size estimation for both genotype and rare variant data; permutation (estimating empirical p-values); and false discovery rate (FDR). The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).<br /> <br /> Application deadline April 1, 2019<br /> <br /> ===More Information===<br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> email: [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Genetic%20Association%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> [https://statgen.research.bcm.edu/files/2019/schedule_berlin_genetic_association_course_2019.pdf Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_Genetic_Association_Course_Application_2019.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_genetic_association_flyer_2019.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=Genassoc2019&diff=800 2019-02-18T21:07:12Z

<p>Suzanne: </p> <hr /> <div>=Genetic Association Course=<br /> With Application to Sequence and Genotype Data<br /> <br /> June 24-28, 2019<br /> <br /> Max Delbruck Center (MDC) for Molecular Medicine<br /> <br /> Berlin, Germany<br /> <br /> =Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;Berlin, Germany===<br /> ==General Information===<br /> The eight Annual Berlin Genetic Association Course will be held at the MDC in Berlin from June 24-28, 2019. The goal of the course is to teach the course participants both theory and application of methods for population-based association analysis, with a concentration on the analysis of exome and whole genome sequence and genotype data.<br /> <br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels.<br /> <br /> The emphasis in this course is on strategies for genetic mapping of complex human traits. It will include theory as well as practical exercises. The exercises will be carried out using a variety of computer programs (PLINK, GenABEL, MACH, UNPHASED, EIGENSTRAT, Variant Association Tools (VAT), SEQPower and R, etc.) and with pencil and paper. The emphasis of this course is on the analysis of population-based whole genome and exome data including genotype and sequence data. TOPICS include: Association analysis of qualitative and quantitative traits; single marker and haplotype analysis; analysis of whole-genome association study data; complex trait rare variant association analysis of next-generation sequence data; data quality control for genotype and next-generation sequence data; haplotype reconstruction; tagSNP selection; controlling population admixture (genomic control, principal components analysis, etc); imputing genotype data from sequence and genotype data; detecting gene x gene and gene x environmental interactions; power and sample size estimation for both genotype and rare variant data; permutation (estimating empirical p-values); and false discovery rate (FDR). The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).<br /> <br /> Application deadline April 1, 2019<br /> <br /> ===More Information===<br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> email: [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Genetic%20Association%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> [https://statgen.research.bcm.edu/files/2019/schedule_berlin_genetic_association_course_2019.pdf Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_Genetic_Association_Course_Application_2019.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_genetic_association_flyer_2019.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=Genassoc2019&diff=799 2019-02-18T21:06:44Z

<p>Suzanne: /* With Application to the Analysis of Sequence and Genotype Data */</p> <hr /> <div>=Genetic Association Course=<br /> With Application to Sequence and Genotype Data<br /> <br /> June 24-28, 2019<br /> <br /> Max Delbruck Center (MDC) for Molecular Medicine<br /> <br /> Berlin, Germany<br /> <br /> =June 24 - 28, 2019===<br /> =Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;Berlin, Germany===<br /> ==General Information===<br /> The eight Annual Berlin Genetic Association Course will be held at the MDC in Berlin from June 24-28, 2019. The goal of the course is to teach the course participants both theory and application of methods for population-based association analysis, with a concentration on the analysis of exome and whole genome sequence and genotype data.<br /> <br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels.<br /> <br /> The emphasis in this course is on strategies for genetic mapping of complex human traits. It will include theory as well as practical exercises. The exercises will be carried out using a variety of computer programs (PLINK, GenABEL, MACH, UNPHASED, EIGENSTRAT, Variant Association Tools (VAT), SEQPower and R, etc.) and with pencil and paper. The emphasis of this course is on the analysis of population-based whole genome and exome data including genotype and sequence data. TOPICS include: Association analysis of qualitative and quantitative traits; single marker and haplotype analysis; analysis of whole-genome association study data; complex trait rare variant association analysis of next-generation sequence data; data quality control for genotype and next-generation sequence data; haplotype reconstruction; tagSNP selection; controlling population admixture (genomic control, principal components analysis, etc); imputing genotype data from sequence and genotype data; detecting gene x gene and gene x environmental interactions; power and sample size estimation for both genotype and rare variant data; permutation (estimating empirical p-values); and false discovery rate (FDR). The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).<br /> <br /> Application deadline April 1, 2019<br /> <br /> ===More Information===<br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> email: [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Genetic%20Association%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> [https://statgen.research.bcm.edu/files/2019/schedule_berlin_genetic_association_course_2019.pdf Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_Genetic_Association_Course_Application_2019.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_genetic_association_flyer_2019.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=Genassoc2019&diff=798 2019-02-18T21:06:16Z

<p>Suzanne: /*   */</p> <hr /> <div>=Genetic Association Course=<br /> With Application to Sequence and Genotype Data<br /> <br /> June 24-28, 2019<br /> <br /> Max Delbruck Center (MDC) for Molecular Medicine<br /> <br /> Berlin, Germany<br /> <br /> =With Application to the Analysis of Sequence and Genotype Data=<br /> <br /> =June 24 - 28, 2019===<br /> =Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;Berlin, Germany===<br /> ==General Information===<br /> The eight Annual Berlin Genetic Association Course will be held at the MDC in Berlin from June 24-28, 2019. The goal of the course is to teach the course participants both theory and application of methods for population-based association analysis, with a concentration on the analysis of exome and whole genome sequence and genotype data.<br /> <br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels.<br /> <br /> The emphasis in this course is on strategies for genetic mapping of complex human traits. It will include theory as well as practical exercises. The exercises will be carried out using a variety of computer programs (PLINK, GenABEL, MACH, UNPHASED, EIGENSTRAT, Variant Association Tools (VAT), SEQPower and R, etc.) and with pencil and paper. The emphasis of this course is on the analysis of population-based whole genome and exome data including genotype and sequence data. TOPICS include: Association analysis of qualitative and quantitative traits; single marker and haplotype analysis; analysis of whole-genome association study data; complex trait rare variant association analysis of next-generation sequence data; data quality control for genotype and next-generation sequence data; haplotype reconstruction; tagSNP selection; controlling population admixture (genomic control, principal components analysis, etc); imputing genotype data from sequence and genotype data; detecting gene x gene and gene x environmental interactions; power and sample size estimation for both genotype and rare variant data; permutation (estimating empirical p-values); and false discovery rate (FDR). The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).<br /> <br /> Application deadline April 1, 2019<br /> <br /> ===More Information===<br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> email: [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Genetic%20Association%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> [https://statgen.research.bcm.edu/files/2019/schedule_berlin_genetic_association_course_2019.pdf Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_Genetic_Association_Course_Application_2019.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_genetic_association_flyer_2019.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=Genassoc2019&diff=797 2019-02-18T21:05:56Z

<p>Suzanne: /* Genetic Association Course */</p> <hr /> <div>=Genetic Association Course=<br /> With Application to Sequence and Genotype Data<br /> <br /> June 24-28, 2019<br /> <br /> Max Delbruck Center (MDC) for Molecular Medicine<br /> <br /> Berlin, Germany<br /> <br /> =&lt;span id=&quot;Max_Delbr.C3.BCck_Center_.28MDC.29_for_Molecular_MedicineBerlin.2C_Germany.3D.3D&quot; class=&quot;mw-headline&quot;&gt; &lt;/span&gt;=<br /> <br /> =With Application to the Analysis of Sequence and Genotype Data=<br /> <br /> =June 24 - 28, 2019===<br /> =Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;Berlin, Germany===<br /> ==General Information===<br /> The eight Annual Berlin Genetic Association Course will be held at the MDC in Berlin from June 24-28, 2019. The goal of the course is to teach the course participants both theory and application of methods for population-based association analysis, with a concentration on the analysis of exome and whole genome sequence and genotype data.<br /> <br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels.<br /> <br /> The emphasis in this course is on strategies for genetic mapping of complex human traits. It will include theory as well as practical exercises. The exercises will be carried out using a variety of computer programs (PLINK, GenABEL, MACH, UNPHASED, EIGENSTRAT, Variant Association Tools (VAT), SEQPower and R, etc.) and with pencil and paper. The emphasis of this course is on the analysis of population-based whole genome and exome data including genotype and sequence data. TOPICS include: Association analysis of qualitative and quantitative traits; single marker and haplotype analysis; analysis of whole-genome association study data; complex trait rare variant association analysis of next-generation sequence data; data quality control for genotype and next-generation sequence data; haplotype reconstruction; tagSNP selection; controlling population admixture (genomic control, principal components analysis, etc); imputing genotype data from sequence and genotype data; detecting gene x gene and gene x environmental interactions; power and sample size estimation for both genotype and rare variant data; permutation (estimating empirical p-values); and false discovery rate (FDR). The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).<br /> <br /> Application deadline April 1, 2019<br /> <br /> ===More Information===<br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> email: [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Genetic%20Association%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> [https://statgen.research.bcm.edu/files/2019/schedule_berlin_genetic_association_course_2019.pdf Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_Genetic_Association_Course_Application_2019.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_genetic_association_flyer_2019.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=Genassoc2019&diff=796 2019-02-18T21:03:36Z

<p>Suzanne: /* Genetic Association Course */</p> <hr /> <div>=Genetic Association Course=<br /> With Application to Sequence and Genotype Data<br /> <br /> June <br /> <br /> =With Application to the Analysis of Sequence and Genotype Data=<br /> <br /> =June 24 - 28, 2019===<br /> =Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;Berlin, Germany===<br /> ==General Information===<br /> The eight Annual Berlin Genetic Association Course will be held at the MDC in Berlin from June 24-28, 2019. The goal of the course is to teach the course participants both theory and application of methods for population-based association analysis, with a concentration on the analysis of exome and whole genome sequence and genotype data.<br /> <br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels.<br /> <br /> The emphasis in this course is on strategies for genetic mapping of complex human traits. It will include theory as well as practical exercises. The exercises will be carried out using a variety of computer programs (PLINK, GenABEL, MACH, UNPHASED, EIGENSTRAT, Variant Association Tools (VAT), SEQPower and R, etc.) and with pencil and paper. The emphasis of this course is on the analysis of population-based whole genome and exome data including genotype and sequence data. TOPICS include: Association analysis of qualitative and quantitative traits; single marker and haplotype analysis; analysis of whole-genome association study data; complex trait rare variant association analysis of next-generation sequence data; data quality control for genotype and next-generation sequence data; haplotype reconstruction; tagSNP selection; controlling population admixture (genomic control, principal components analysis, etc); imputing genotype data from sequence and genotype data; detecting gene x gene and gene x environmental interactions; power and sample size estimation for both genotype and rare variant data; permutation (estimating empirical p-values); and false discovery rate (FDR). The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).<br /> <br /> Application deadline April 1, 2019<br /> <br /> ===More Information===<br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> email: [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Genetic%20Association%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> [https://statgen.research.bcm.edu/files/2019/schedule_berlin_genetic_association_course_2019.pdf Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_Genetic_Association_Course_Application_2019.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_genetic_association_flyer_2019.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=Genassoc2019&diff=795 2019-02-18T21:02:43Z

<p>Suzanne: /* Genetic Association Course */</p> <hr /> <div>=Genetic Association Course=<br /> With Application to Sequence and Genotype Data<br /> <br /> =With Application to the Analysis of Sequence and Genotype Data=<br /> <br /> =June 24 - 28, 2019===<br /> =Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;Berlin, Germany===<br /> ==General Information===<br /> The eight Annual Berlin Genetic Association Course will be held at the MDC in Berlin from June 24-28, 2019. The goal of the course is to teach the course participants both theory and application of methods for population-based association analysis, with a concentration on the analysis of exome and whole genome sequence and genotype data.<br /> <br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels.<br /> <br /> The emphasis in this course is on strategies for genetic mapping of complex human traits. It will include theory as well as practical exercises. The exercises will be carried out using a variety of computer programs (PLINK, GenABEL, MACH, UNPHASED, EIGENSTRAT, Variant Association Tools (VAT), SEQPower and R, etc.) and with pencil and paper. The emphasis of this course is on the analysis of population-based whole genome and exome data including genotype and sequence data. TOPICS include: Association analysis of qualitative and quantitative traits; single marker and haplotype analysis; analysis of whole-genome association study data; complex trait rare variant association analysis of next-generation sequence data; data quality control for genotype and next-generation sequence data; haplotype reconstruction; tagSNP selection; controlling population admixture (genomic control, principal components analysis, etc); imputing genotype data from sequence and genotype data; detecting gene x gene and gene x environmental interactions; power and sample size estimation for both genotype and rare variant data; permutation (estimating empirical p-values); and false discovery rate (FDR). The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).<br /> <br /> Application deadline April 1, 2019<br /> <br /> ===More Information===<br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> email: [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Genetic%20Association%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> [https://statgen.research.bcm.edu/files/2019/schedule_berlin_genetic_association_course_2019.pdf Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_Genetic_Association_Course_Application_2019.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_genetic_association_flyer_2019.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=Genassoc2019&diff=794 2019-02-18T21:02:03Z

<p>Suzanne: /* With Application to the Analysis of Sequence and Genotype Data= */</p> <hr /> <div>=Genetic Association Course=<br /> =With Application to the Analysis of Sequence and Genotype Data=<br /> <br /> =June 24 - 28, 2019===<br /> =Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;Berlin, Germany===<br /> ==General Information===<br /> The eight Annual Berlin Genetic Association Course will be held at the MDC in Berlin from June 24-28, 2019. The goal of the course is to teach the course participants both theory and application of methods for population-based association analysis, with a concentration on the analysis of exome and whole genome sequence and genotype data.<br /> <br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels.<br /> <br /> The emphasis in this course is on strategies for genetic mapping of complex human traits. It will include theory as well as practical exercises. The exercises will be carried out using a variety of computer programs (PLINK, GenABEL, MACH, UNPHASED, EIGENSTRAT, Variant Association Tools (VAT), SEQPower and R, etc.) and with pencil and paper. The emphasis of this course is on the analysis of population-based whole genome and exome data including genotype and sequence data. TOPICS include: Association analysis of qualitative and quantitative traits; single marker and haplotype analysis; analysis of whole-genome association study data; complex trait rare variant association analysis of next-generation sequence data; data quality control for genotype and next-generation sequence data; haplotype reconstruction; tagSNP selection; controlling population admixture (genomic control, principal components analysis, etc); imputing genotype data from sequence and genotype data; detecting gene x gene and gene x environmental interactions; power and sample size estimation for both genotype and rare variant data; permutation (estimating empirical p-values); and false discovery rate (FDR). The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).<br /> <br /> Application deadline April 1, 2019<br /> <br /> ===More Information===<br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> email: [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Genetic%20Association%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> [https://statgen.research.bcm.edu/files/2019/schedule_berlin_genetic_association_course_2019.pdf Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_Genetic_Association_Course_Application_2019.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_genetic_association_flyer_2019.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=Genassoc2019&diff=793 2019-02-18T21:01:23Z

<p>Suzanne: /* Genetic Association Course */</p> <hr /> <div>=Genetic Association Course=<br /> =With Application to the Analysis of Sequence and Genotype Data==<br /> =June 24 - 28, 2019===<br /> =Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;Berlin, Germany===<br /> ==General Information===<br /> The eight Annual Berlin Genetic Association Course will be held at the MDC in Berlin from June 24-28, 2019. The goal of the course is to teach the course participants both theory and application of methods for population-based association analysis, with a concentration on the analysis of exome and whole genome sequence and genotype data.<br /> <br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels.<br /> <br /> The emphasis in this course is on strategies for genetic mapping of complex human traits. It will include theory as well as practical exercises. The exercises will be carried out using a variety of computer programs (PLINK, GenABEL, MACH, UNPHASED, EIGENSTRAT, Variant Association Tools (VAT), SEQPower and R, etc.) and with pencil and paper. The emphasis of this course is on the analysis of population-based whole genome and exome data including genotype and sequence data. TOPICS include: Association analysis of qualitative and quantitative traits; single marker and haplotype analysis; analysis of whole-genome association study data; complex trait rare variant association analysis of next-generation sequence data; data quality control for genotype and next-generation sequence data; haplotype reconstruction; tagSNP selection; controlling population admixture (genomic control, principal components analysis, etc); imputing genotype data from sequence and genotype data; detecting gene x gene and gene x environmental interactions; power and sample size estimation for both genotype and rare variant data; permutation (estimating empirical p-values); and false discovery rate (FDR). The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).<br /> <br /> Application deadline April 1, 2019<br /> <br /> ===More Information===<br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> email: [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Genetic%20Association%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> [https://statgen.research.bcm.edu/files/2019/schedule_berlin_genetic_association_course_2019.pdf Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_Genetic_Association_Course_Application_2019.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_genetic_association_flyer_2019.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=Genassoc2019&diff=792 2019-02-18T20:59:57Z

<p>Suzanne: /* With Application to the Analysis of Sequence and Genotype Data */</p> <hr /> <div>=Genetic Association Course=<br /> ==With Application to the Analysis of Sequence and Genotype Data==<br /> ===June 24 - 28, 2019===<br /> ===Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;Berlin, Germany===<br /> ===General Information===<br /> The eight Annual Berlin Genetic Association Course will be held at the MDC in Berlin from June 24-28, 2019. The goal of the course is to teach the course participants both theory and application of methods for population-based association analysis, with a concentration on the analysis of exome and whole genome sequence and genotype data.<br /> <br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels.<br /> <br /> The emphasis in this course is on strategies for genetic mapping of complex human traits. It will include theory as well as practical exercises. The exercises will be carried out using a variety of computer programs (PLINK, GenABEL, MACH, UNPHASED, EIGENSTRAT, Variant Association Tools (VAT), SEQPower and R, etc.) and with pencil and paper. The emphasis of this course is on the analysis of population-based whole genome and exome data including genotype and sequence data. TOPICS include: Association analysis of qualitative and quantitative traits; single marker and haplotype analysis; analysis of whole-genome association study data; complex trait rare variant association analysis of next-generation sequence data; data quality control for genotype and next-generation sequence data; haplotype reconstruction; tagSNP selection; controlling population admixture (genomic control, principal components analysis, etc); imputing genotype data from sequence and genotype data; detecting gene x gene and gene x environmental interactions; power and sample size estimation for both genotype and rare variant data; permutation (estimating empirical p-values); and false discovery rate (FDR). The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).<br /> <br /> Application deadline April 1, 2019<br /> <br /> ===More Information===<br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> email: [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Genetic%20Association%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> [https://statgen.research.bcm.edu/files/2019/schedule_berlin_genetic_association_course_2019.pdf Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_Genetic_Association_Course_Application_2019.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_genetic_association_flyer_2019.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=Genassoc2019&diff=791 2019-02-18T20:58:59Z

<p>Suzanne: /* General Information */</p> <hr /> <div>=Genetic Association Course=<br /> ==With Application to the Analysis of Sequence and Genotype Data==<br /> ===June 24 - 28, 2019&lt;br /&gt;Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;Berlin, Germany===<br /> ===General Information===<br /> The eight Annual Berlin Genetic Association Course will be held at the MDC in Berlin from June 24-28, 2019. The goal of the course is to teach the course participants both theory and application of methods for population-based association analysis, with a concentration on the analysis of exome and whole genome sequence and genotype data.<br /> <br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels.<br /> <br /> The emphasis in this course is on strategies for genetic mapping of complex human traits. It will include theory as well as practical exercises. The exercises will be carried out using a variety of computer programs (PLINK, GenABEL, MACH, UNPHASED, EIGENSTRAT, Variant Association Tools (VAT), SEQPower and R, etc.) and with pencil and paper. The emphasis of this course is on the analysis of population-based whole genome and exome data including genotype and sequence data. TOPICS include: Association analysis of qualitative and quantitative traits; single marker and haplotype analysis; analysis of whole-genome association study data; complex trait rare variant association analysis of next-generation sequence data; data quality control for genotype and next-generation sequence data; haplotype reconstruction; tagSNP selection; controlling population admixture (genomic control, principal components analysis, etc); imputing genotype data from sequence and genotype data; detecting gene x gene and gene x environmental interactions; power and sample size estimation for both genotype and rare variant data; permutation (estimating empirical p-values); and false discovery rate (FDR). The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).<br /> <br /> Application deadline April 1, 2019<br /> <br /> ===More Information===<br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> email: [mailto:sleal@bcm.edu?subject=Genetic%20Association%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Genetic%20Association%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> [https://statgen.research.bcm.edu/files/2019/schedule_berlin_genetic_association_course_2019.pdf Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_Genetic_Association_Course_Application_2019.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_genetic_association_flyer_2019.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=ComplexNGS2019&diff=790 2019-02-18T20:58:07Z

<p>Suzanne: /* General Information */</p> <hr /> <div>__NOTITLE__<br /> <br /> =Complex Trait Analysis of Next Generation Sequence Data=<br /> November 11-15, 2019&lt;br /&gt;<br /> Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;<br /> Berlin, Germany<br /> <br /> ===General Information===<br /> The fifth annual course on Complex Trait Analysis of Next Generation Sequence Data will be held at the MDC in Berlin from November 11-15, 2019. The goal of the course is to teach both the theory and application of methods to analyze next-generation sequence (NGS) data for human complex traits. Attendees will learn how to design studies, call variants from NGS data, analysis of population-, trio- and family-based sequence data and evaluation of variant functionality. Analyses will include performing complex trait rare variant association analysis for population and trio data. Exercises will be carried out using a variety of computer programs (GATK, IGV, Polyphen2, PSEQ, SEQPower, SEQSpark and Variant Association Tools (VAT)). TOPICS will be include: sequence alignment, calling variants from NGS data, quality control of NGS data, association testing framework for quantitative and qualitative traits (fixed effects, random effects and mixed models), rare variant association methods, estimating power and sample size for rare variant association studies, imputation of rare variants and their analysis, and evaluating variant conservation and functionality.<br /> <br /> ===Instructors===<br /> The instructors for the course are [https://www.bcm.edu/research/labs/center-for-statistical-genetics/ Suzanne Leal] (Baylor College of Medicine) and [http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/ Michael Nothnagel] (University of Cologne).<br /> <br /> <br /> ===More Information===<br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels. The maximum number of participants is 35.<br /> <br /> Application deadline January 10, 2019<br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> <br /> email: [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> <br /> [https://statgen.research.bcm.edu/files/2019/schedule_berlin_complex_ngs_2019.pdf Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_NGS_Complex_Trait_Application_2019.html Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019//Berlin_NGS_complex_traits_course_flyer_2019.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=ComplexNGS2019&diff=789 2019-02-18T20:57:39Z

<p>Suzanne: /* General Information */</p> <hr /> <div>__NOTITLE__<br /> <br /> =Complex Trait Analysis of Next Generation Sequence Data=<br /> November 11-15, 2019&lt;br /&gt;<br /> Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;<br /> Berlin, Germany<br /> <br /> ===General Information===<br /> The fourth annual course on Complex Trait Analysis of Next Generation Sequence Data will be held at the MDC in Berlin from November 11-15, 2019. The goal of the course is to teach both the theory and application of methods to analyze next-generation sequence (NGS) data for human complex traits. Attendees will learn how to design studies, call variants from NGS data, analysis of population-, trio- and family-based sequence data and evaluation of variant functionality. Analyses will include performing complex trait rare variant association analysis for population and trio data. Exercises will be carried out using a variety of computer programs (GATK, IGV, Polyphen2, PSEQ, SEQPower, SEQSpark and Variant Association Tools (VAT)). TOPICS will be include: sequence alignment, calling variants from NGS data, quality control of NGS data, association testing framework for quantitative and qualitative traits (fixed effects, random effects and mixed models), rare variant association methods, estimating power and sample size for rare variant association studies, imputation of rare variants and their analysis, and evaluating variant conservation and functionality.<br /> <br /> ===Instructors===<br /> The instructors for the course are [https://www.bcm.edu/research/labs/center-for-statistical-genetics/ Suzanne Leal] (Baylor College of Medicine) and [http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/ Michael Nothnagel] (University of Cologne).<br /> <br /> <br /> ===More Information===<br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels. The maximum number of participants is 35.<br /> <br /> Application deadline January 10, 2019<br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> <br /> email: [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> <br /> [https://statgen.research.bcm.edu/files/2019/schedule_berlin_complex_ngs_2019.pdf Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_NGS_Complex_Trait_Application_2019.html Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019//Berlin_NGS_complex_traits_course_flyer_2019.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=ComplexNGS2019&diff=788 2019-02-18T20:56:30Z

<p>Suzanne: /* Complex Trait Analysis of Next Generation Sequence Data */</p> <hr /> <div>__NOTITLE__<br /> <br /> =Complex Trait Analysis of Next Generation Sequence Data=<br /> November 11-15, 2019&lt;br /&gt;<br /> Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;<br /> Berlin, Germany<br /> <br /> ===General Information===<br /> The fourth annual course on Complex Trait Analysis of Next Generation Sequence Data will be held at the MDC in Berlin from March 25-29, 2019. The goal of the course is to teach both the theory and application of methods to analyze next-generation sequence (NGS) data for human complex traits. Attendees will learn how to design studies, call variants from NGS data, analysis of population-, trio- and family-based sequence data and evaluation of variant functionality. Analyses will include performing complex trait rare variant association analysis for population and trio data. Exercises will be carried out using a variety of computer programs (GATK, IGV, Polyphen2, PSEQ, SEQPower, SEQSpark and Variant Association Tools (VAT)). TOPICS will be include: sequence alignment, calling variants from NGS data, quality control of NGS data, association testing framework for quantitative and qualitative traits (fixed effects, random effects and mixed models), rare variant association methods, estimating power and sample size for rare variant association studies, imputation of rare variants and their analysis, and evaluating variant conservation and functionality.<br /> <br /> ===Instructors===<br /> The instructors for the course are [https://www.bcm.edu/research/labs/center-for-statistical-genetics/ Suzanne Leal] (Baylor College of Medicine) and [http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/ Michael Nothnagel] (University of Cologne).<br /> <br /> <br /> ===More Information===<br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels. The maximum number of participants is 35.<br /> <br /> Application deadline January 10, 2019<br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> <br /> email: [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> <br /> [https://statgen.research.bcm.edu/files/2019/schedule_berlin_complex_ngs_2019.pdf Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019/Berlin_NGS_Complex_Trait_Application_2019.html Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2019//Berlin_NGS_complex_traits_course_flyer_2019.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=Advgenemap2019&diff=730 2018-09-06T08:36:11Z

<p>Suzanne: /* General Information */</p> <hr /> <div>__NOTITLE__<br /> <br /> ==Advanced Gene Mapping Course==<br /> The Rockefeller University, New York&lt;br /&gt;<br /> Welch – The Great Hall&lt;br /&gt;<br /> Monday through Friday, January 28-February 1, 2019<br /> <br /> ===General Information===<br /> An advanced gene mapping course will be held in New York from Monday through Friday, January 28-February 1 2019. The cost of the 5-day course is $100 for student, academic and government researchers and $2,800 for researchers working in industry. This fee covers tuition and course-related expenses (handouts, etc.) but not room and board.<br /> <br /> The course emphasis is on the analysis of complex human disease traits; concentrating on methods to detect rare and common variant associations. The course includes theory as well as practical exercises. The exercises will be carried out using a variety of computer programs including BEAM3, GERP, GotCloud, GenAbel, Matrix-eQTL, PLINK, PrediXCan, Polyphen-2, R, SEQPower, Variant Association Tools (VAT), etc. Topics include: Analysis of whole genome association studies; analysis of rare variants using next-generation sequence data; analysis of qualitative and quantitative traits (population and family-based data); Linear mixed models; eQTL mapping; prediction models using RNAseq and array data; inferences for heritability estimation and prediction; functional prediction of variant sites, variant annotation; variant calling, controlling for population substructure\admixture (principal components analysis\multidimensionality scaling); data quality control of genotype and sequence data; meta-analysis; gene x gene interaction; sample size estimation and evaluating power for common and rare variants.<br /> <br /> ===Course Instructors===<br /> The instructors for the course are Goncalo Abecasis (University of Michigan), Heather Cordell (University of Newcastle), Nancy Cox (Vanderbilt University), Suzanne Leal (The Rockefeller University &amp; Baylor College of Medicine), and Shamil Sunyaev (Harvard University).<br /> <br /> <br /> <br /> ===More Information===<br /> The maximum number of participants is 30. The course will take place in the Great Hall in Welch at The Rockefeller University, Students will perform exercises by connecting to the cloud using their own laptops. Laptops are also available for students to use for the duration of the course. The course is wheelchair accessible. All disabilities will be accommodated. Handicapped individuals are encouraged to apply.<br /> <br /> Four travel stipends of up to $1,000 each are available. Eligibility requirements are: (1) sufficient background and practical experience in statistical analysis of genetic data, and (2) demonstrated financial need. Preference for stipends will be given to pre-doctoral students and postdoctoral researchers. To apply for such a stipend, please attach a letter of request and enclose a letter of reference and proof of student or postdoctoral status.<br /> <br /> Knowledge genetic association analysis, genetic epidemiology and/or statistical genetics are screening criteria for selection of participants. Please describe your experience in detail in your application. We may contact you personally to discuss your application. Although the experience of using LINUX is not necessary it is highly beneficial to have basic knowledge of this operating system before the start of the course.<br /> <br /> For additional information, please contact Katherine Montague:&lt;br /&gt;<br /> email: [mailto:montagk@rockefeller.edu montagk@rockefeller.edu]&lt;br /&gt;<br /> Tel: +1 (212) 327-7979<br /> <br /> For additional information on scientific program contact the course organizer Suzanne Leal:&lt;br /&gt;<br /> email: [mailto:sleal@bcm.edu sleal@bcm.edu] or [mailto:suzannemleal@gmail.com suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011<br /> <br /> Application deadline is Monday, November 12, 2018<br /> <br /> [https://statgen.research.bcm.edu/files/2019/Application_Advanced_Gene_Mapping_Jan_2019.html Click here for application form]<br /> <br /> [https://statgen.research.bcm.edu/files/2019/Rockefeller_advanced_course_flyer_2019.pdf Click here for course flyer] – Please Post and Distribute<br /> <br /> [https://statgen.research.bcm.edu/files/2019/adv_gene_mapping_schedule_2019.pdf Click here for course schedule]<br /> <br /> <br /> <br /> This course is supported by a grant from the National Institute of Health (NIH) - National Human Genome Research Institute (NHGRI).</div>

Suzanne http://statgen.us/index.php?title=Advgenemap2019&diff=729 2018-09-06T08:35:36Z

<p>Suzanne: /* More Information */</p> <hr /> <div>__NOTITLE__<br /> <br /> ==Advanced Gene Mapping Course==<br /> The Rockefeller University, New York&lt;br /&gt;<br /> Welch – The Great Hall&lt;br /&gt;<br /> Monday through Friday, January 28-February 1, 2019<br /> <br /> ===General Information===<br /> An advanced gene mapping course will be held in New York from Monday through Friday, January 28-February 1 2019. The cost of the 5-day course is $100 for student, academic and government researchers and $2,800 for researchers working in industry. This fee covers tuition and course-related expenses (handouts, etc.) but not room and board.<br /> <br /> The course emphasis is analysis of complex human disease traits; concentrating on methods to detect rare and common variant associations. The course includes theory as well as practical exercises. The exercises will be carried out using a variety of computer programs including BEAM3, GERP, GotCloud, GenAbel, Matrix-eQTL, PLINK, PrediXCan, Polyphen-2, R, SEQPower, Variant Association Tools (VAT), etc. Topics include: Analysis of whole genome association studies; analysis of rare variants using next-generation sequence data; analysis of qualitative and quantitative traits (population and family-based data); Linear mixed models; eQTL mapping; prediction models using RNAseq and array data; inferences for heritability estimation and prediction; functional prediction of variant sites, variant annotation; variant calling, controlling for population substructure\admixture (principal components analysis\multidimensionality scaling); data quality control of genotype and sequence data; meta-analysis; gene x gene interaction; sample size estimation and evaluating power for common and rare variants.<br /> <br /> ===Course Instructors===<br /> The instructors for the course are Goncalo Abecasis (University of Michigan), Heather Cordell (University of Newcastle), Nancy Cox (Vanderbilt University), Suzanne Leal (The Rockefeller University &amp; Baylor College of Medicine), and Shamil Sunyaev (Harvard University).<br /> <br /> <br /> <br /> ===More Information===<br /> The maximum number of participants is 30. The course will take place in the Great Hall in Welch at The Rockefeller University, Students will perform exercises by connecting to the cloud using their own laptops. Laptops are also available for students to use for the duration of the course. The course is wheelchair accessible. All disabilities will be accommodated. Handicapped individuals are encouraged to apply.<br /> <br /> Four travel stipends of up to $1,000 each are available. Eligibility requirements are: (1) sufficient background and practical experience in statistical analysis of genetic data, and (2) demonstrated financial need. Preference for stipends will be given to pre-doctoral students and postdoctoral researchers. To apply for such a stipend, please attach a letter of request and enclose a letter of reference and proof of student or postdoctoral status.<br /> <br /> Knowledge genetic association analysis, genetic epidemiology and/or statistical genetics are screening criteria for selection of participants. Please describe your experience in detail in your application. We may contact you personally to discuss your application. Although the experience of using LINUX is not necessary it is highly beneficial to have basic knowledge of this operating system before the start of the course.<br /> <br /> For additional information, please contact Katherine Montague:&lt;br /&gt;<br /> email: [mailto:montagk@rockefeller.edu montagk@rockefeller.edu]&lt;br /&gt;<br /> Tel: +1 (212) 327-7979<br /> <br /> For additional information on scientific program contact the course organizer Suzanne Leal:&lt;br /&gt;<br /> email: [mailto:sleal@bcm.edu sleal@bcm.edu] or [mailto:suzannemleal@gmail.com suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011<br /> <br /> Application deadline is Monday, November 12, 2018<br /> <br /> [https://statgen.research.bcm.edu/files/2019/Application_Advanced_Gene_Mapping_Jan_2019.html Click here for application form]<br /> <br /> [https://statgen.research.bcm.edu/files/2019/Rockefeller_advanced_course_flyer_2019.pdf Click here for course flyer] – Please Post and Distribute<br /> <br /> [https://statgen.research.bcm.edu/files/2019/adv_gene_mapping_schedule_2019.pdf Click here for course schedule]<br /> <br /> <br /> <br /> This course is supported by a grant from the National Institute of Health (NIH) - National Human Genome Research Institute (NHGRI).</div>

Suzanne http://statgen.us/index.php?title=Previous_Courses&diff=728 2018-08-17T23:56:54Z

<p>Suzanne: </p> <hr /> <div><br /> ==2017 Courses==<br /> <br /> ==2016 Courses==<br /> * [[NGSMendelian2016|NGS Analysis of Mendelian Traits - MDC Berlin]]<br /> * [[Genassoc2016|Genetic Association -MDC Berlin]]<br /> * [[ComplexNGS2016|NGS Analysis of Complex Traits- MDC Berlin]]<br /> * [[Advgenemap2016|Advanced Gene Mapping - Rockefeller NYC]]<br /> <br /> ==2015 Courses==<br /> * [[2015SeptMDC|NGS Analysis of Mendelian Traits - MDC Berlin]]<br /> * [[2015JuneMDC|Genetic Association- MDC Berlin]]<br /> * [[2015MarchMDC|NGS Analysis of Complex Traits -MDC Berlin]]<br /> * [[2015AdvancedGeneMapping|Advanced Gene Mapping - Rockefeller NYC]]<br /> <br /> ==2014 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Genetic Association Course - MDC Berlin March 2014]&lt;br /&gt;<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Next Generation Sequence Data Analysis Course - MDC Berlin June 2014]<br /> <br /> ==2013 Course==<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Genetic Association Course - Berlin: June 2013]<br /> <br /> ==2012 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Genetic Association Course - MDC Berlin July 2012]&lt;br /&gt;<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84Basic Gene Mapping Course - MDC Berlin November 2012]<br /> <br /> ==2011 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - MDC Berlin July 2011]&lt;br /&gt;<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course -MDC Berlin November 2011]<br /> <br /> ==2010 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Genetic Association Course - MDC Berlin May 2010]<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Basic Gene Mapping Course - MDC Berlin October 2010]<br /> <br /> ==2009 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Basic Gene Mapping Course - MDC Berlin: November 2009]<br /> <br /> ==2008 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Basic Gene Mapping Course - MDC Berlin: July 2008]<br /> <br /> ==2007 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Basic Gene Mapping Course - MDC Berlin: July 2007]<br /> <br /> ==2006 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Basic Gene Mapping Course - MDC Berlin: July 2006]<br /> <br /> ==2005 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Basic Gene Mapping Course - MDC Berlin July 2005]<br /> <br /> ==2004 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Basic Gene Mapping Course - MDC July 2004]<br /> <br /> ==2003 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Basic Gene Mapping Course - MDC Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=Previous_Courses&diff=727 2018-08-17T23:23:30Z

<p>Suzanne: </p> <hr /> <div>==2016 Courses==<br /> * [[NGSMendelian2016|NGS Analysis of Mendelian Traits - MDC Berlin]]<br /> * [[Genassoc2016|Genetic Association -MDC Berlin]]<br /> * [[ComplexNGS2016|NGS Analysis of Complex Traits- MDC Berlin]]<br /> * [[Advgenemap2016|Advanced Gene Mapping - Rockefeller NYC]]<br /> <br /> <br /> <br /> ==2015 Courses==<br /> * [[2015SeptMDC|NGS Analysis of Mendelian Traits - MDC Berlin]]<br /> * [[2015JuneMDC|Genetic Association- MDC Berlin]]<br /> * [[2015MarchMDC|NGS Analysis of Complex Traits -MDC Berlin]]<br /> * [[2015AdvancedGeneMapping|Advanced Gene Mapping - Rockefeller NYC]]<br /> <br /> ==2014 Course==<br /> ==2013 Course==<br /> ==2012 Course==<br /> ==2011 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]<br /> ==2010 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Genetic Association Course - MDC Berlin May 2010]&lt;br /&gt;<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Basic Gene Mapping Course - MDC Berlin October 2010]<br /> ==2009 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Basic Gene Mapping Course - MDC Berlin: November 2009]<br /> ==2008 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Basic Gene Mapping Course - MDC Berlin: July 2008]<br /> ==2007 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Basic Gene Mapping Course - MDC Berlin: July 2007]<br /> ==2006 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Basic Gene Mapping Course - MDC Berlin: July 2006]<br /> ==2005 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Basic Gene Mapping Course - MDC Berlin July 2005]<br /> ==2004 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Basic Gene Mapping Course - MDC July 2004]<br /> ==2003 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Basic Gene Mapping Course - MDC Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=Previous_Courses&diff=726 2018-08-17T23:21:51Z

<p>Suzanne: </p> <hr /> <div>==2016 Courses==<br /> * [[NGSMendelian2016|NGS Analysis of Mendelian Traits - MDC Berlin]]<br /> * [[Genassoc2016|Genetic Association -MDC Berlin]]<br /> * [[ComplexNGS2016|NGS Analysis of Complex Traits- MDC Berlin]]<br /> * [[Advgenemap2016|Advanced Gene Mapping - Rockefeller NYC]]<br /> <br /> <br /> <br /> ==2015 Courses==<br /> * [[2015SeptMDC|NGS Analysis of Mendelian Traits - MDC Berlin]]<br /> * [[2015JuneMDC|Genetic Association- MDC Berlin]]<br /> * [[2015MarchMDC|NGS Analysis of Complex Traits -MDC Berlin]]<br /> * [[2015AdvancedGeneMapping|Advanced Gene Mapping - Rockefeller NYC]]<br /> <br /> ==2014 Course==<br /> ==2013 Course==<br /> ==2012 Course==<br /> ==2011 Course==<br /> ==2010 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Genetic Association Course - MDC Berlin May 2010]&lt;br /&gt;<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Basic Gene Mapping Course - MDC Berlin October 2010]<br /> ==2009 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Basic Gene Mapping Course - MDC Berlin: November 2009]<br /> ==2008 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Basic Gene Mapping Course - MDC Berlin: July 2008]<br /> ==2007 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Basic Gene Mapping Course - MDC Berlin: July 2007]<br /> ==2006 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Basic Gene Mapping Course - MDC Berlin: July 2006]<br /> ==2005 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Basic Gene Mapping Course - MDC Berlin July 2005]<br /> ==2004 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Basic Gene Mapping Course - MDC July 2004]<br /> ==2003 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Basic Gene Mapping Course - MDC Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=ComplexNGS2018&diff=725 2018-08-17T23:13:16Z

<p>Suzanne: </p> <hr /> <div>__NOTITLE__<br /> <br /> =Complex Trait Analysis of Next Generation Sequence Data=<br /> June 18-22, 2018&lt;br /&gt;<br /> Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;<br /> Berlin, Germany<br /> <br /> ===General Information===<br /> The fourth annual course on Complex Trait Analysis of Next Generation Sequence Data will be held at the MDC in Berlin from June 18-22, 2018. The goal of the course is to teach both the theory and application of methods to analyze next-generation sequence (NGS) data for human complex traits. Attendees will learn how to design studies, call variants from NGS data, analysis of population-, trio- and family-based sequence data and evaluation of variant functionality. Analyses will include performing complex trait rare variant association analysis for population and trio data. Exercises will be carried out using a variety of computer programs (GATK, IGV, Polyphen2, PSEQ, SEQPower, SEQSpark and Variant Association Tools (VAT)). TOPICS will be include: sequence alignment, calling variants from NGS data, quality control of NGS data, association testing framework for quantitative and qualitative traits (fixed effects, random effects and mixed models), rare variant association methods, estimating power and sample size for rare variant association studies, imputation of rare variants and their analysis, and evaluating variant conservation and functionality.<br /> <br /> ===Instructors===<br /> The instructors for the course are [https://www.bcm.edu/research/labs/center-for-statistical-genetics/ Suzanne Leal] (Baylor College of Medicine) and [http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/ Michael Nothnagel] (University of Cologne).<br /> <br /> ===More Information===<br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels. The maximum number of participants is 35.<br /> <br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> <br /> email: [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> ===Course Photos===<br /> [[File:Mich_Suz_NGS_Complex_2018.jpg |none|500x600px]]<br /> [[File:course_NGS_Complex_2018.jpg|none|1000x1333px]]<br /> <br /> <br /> <br /> [https://statgen.research.bcm.edu/files/2018/06/info/schedule_berlin_complex_ngs_2018.docx Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_Complex_Trait_Application_2018.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_complex_traits_course_flyer_2018.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=ComplexNGS2018&diff=724 2018-08-17T23:10:16Z

<p>Suzanne: </p> <hr /> <div>__NOTITLE__<br /> <br /> =Complex Trait Analysis of Next Generation Sequence Data=<br /> June 18-22, 2018&lt;br /&gt;<br /> Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;<br /> Berlin, Germany<br /> <br /> ===General Information===<br /> The fourth annual course on Complex Trait Analysis of Next Generation Sequence Data will be held at the MDC in Berlin from June 18-22, 2018. The goal of the course is to teach both the theory and application of methods to analyze next-generation sequence (NGS) data for human complex traits. Attendees will learn how to design studies, call variants from NGS data, analysis of population-, trio- and family-based sequence data and evaluation of variant functionality. Analyses will include performing complex trait rare variant association analysis for population and trio data. Exercises will be carried out using a variety of computer programs (GATK, IGV, Polyphen2, PSEQ, SEQPower, SEQSpark and Variant Association Tools (VAT)). TOPICS will be include: sequence alignment, calling variants from NGS data, quality control of NGS data, association testing framework for quantitative and qualitative traits (fixed effects, random effects and mixed models), rare variant association methods, estimating power and sample size for rare variant association studies, imputation of rare variants and their analysis, and evaluating variant conservation and functionality.<br /> <br /> ===Instructors===<br /> The instructors for the course are [https://www.bcm.edu/research/labs/center-for-statistical-genetics/ Suzanne Leal] (Baylor College of Medicine) and [http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/ Michael Nothnagel] (University of Cologne).<br /> <br /> ===More Information===<br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels. The maximum number of participants is 35.<br /> <br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> <br /> email: [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> ===Course Photos===<br /> [[File:Mich_Suz_NGS_Complex_2018.jpg |none]][[File:course_NGS_Complex_2018.jpg|none|1000x1333px]]<br /> <br /> <br /> <br /> [https://statgen.research.bcm.edu/files/2018/06/info/schedule_berlin_complex_ngs_2018.docx Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_Complex_Trait_Application_2018.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_complex_traits_course_flyer_2018.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=ComplexNGS2018&diff=723 2018-08-17T23:08:37Z

<p>Suzanne: </p> <hr /> <div>__NOTITLE__<br /> <br /> =Complex Trait Analysis of Next Generation Sequence Data=<br /> June 18-22, 2018&lt;br /&gt;<br /> Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;<br /> Berlin, Germany<br /> <br /> ===General Information===<br /> The fourth annual course on Complex Trait Analysis of Next Generation Sequence Data will be held at the MDC in Berlin from June 18-22, 2018. The goal of the course is to teach both the theory and application of methods to analyze next generation sequence (NGS) data for human complex traits. Attendees will learn how to design studies, call variants from NGS data, analysis of population-, trio- and family-based sequence data and evaluation of variant functionality. Analyses will include performing complex trait rare variant association analysis for population and trio data. Exercises will be carried out using a variety of computer programs (GATK, IGV, Polyphen2, PSEQ, SEQPower, SEQSpark and Variant Association Tools (VAT)). TOPICS will be include: sequence alignment, calling variants from NGS data, quality control of NGS data, association testing framework for quantitative and qualitative traits (fixed effects, random effects and mixed models), rare variant association methods, estimating power and sample size for rare variant association studies, imputation of rare variants and their analysis, and evaluating variant conservation and functionality.<br /> <br /> ===Instructors===<br /> The instructors for the course are [https://www.bcm.edu/research/labs/center-for-statistical-genetics/ Suzanne Leal] (Baylor College of Medicine) and [http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/ Michael Nothnagel] (University of Cologne).<br /> <br /> ===More Information===<br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels. The maximum number of participants is 35.<br /> <br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> <br /> email: [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> ===Course Photos===<br /> [[File:Mich_Suz_NGS_Complex_2018.jpg |none|500x666px]][[File:course_NGS_Complex_2018.jpg|none|750x999px]]<br /> <br /> <br /> <br /> [https://statgen.research.bcm.edu/files/2018/06/info/schedule_berlin_complex_ngs_2018.docx Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_Complex_Trait_Application_2018.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_complex_traits_course_flyer_2018.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=ComplexNGS2018&diff=722 2018-08-17T23:06:39Z

<p>Suzanne: </p> <hr /> <div>__NOTITLE__<br /> <br /> =Complex Trait Analysis of Next Generation Sequence Data=<br /> June 18-22, 2018&lt;br /&gt;<br /> Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;<br /> Berlin, Germany<br /> <br /> ===General Information===<br /> The fourth annual course on Complex Trait Analysis of Next Generation Sequence Data will be held at the MDC in Berlin from June 18-22, 2018. The goal of the course is to teach both the theory and application of methods to analyze next generation sequence (NGS) data for human complex traits. Attendees will learn how to design studies, call variants from NGS data, analysis of population-, trio- and family-based sequence data and evaluation of variant functionality. Analyses will include performing complex trait rare variant association analysis for population and trio data. Exercises will be carried out using a variety of computer programs (GATK, IGV, Polyphen2, PSEQ, SEQPower, SEQSpark and Variant Association Tools (VAT)). TOPICS will be include: sequence alignment, calling variants from NGS data, quality control of NGS data, association testing framework for quantitative and qualitative traits (fixed effects, random effects and mixed models), rare variant association methods, estimating power and sample size for rare variant association studies, imputation of rare variants and their analysis, and evaluating variant conservation and functionality.<br /> <br /> ===Instructors===<br /> The instructors for the course are [https://www.bcm.edu/research/labs/center-for-statistical-genetics/ Suzanne Leal] (Baylor College of Medicine) and [http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/ Michael Nothnagel] (University of Cologne).<br /> <br /> ===More Information===<br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels. The maximum number of participants is 35.<br /> <br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> <br /> email: [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> ===Course Photos===<br /> [[File:Mich_Suz_NGS_Complex_2018.jpg |none|250x333px]]<br /> [[File:course_NGS_Complex_2018.jpg|none|750x999px]]<br /> <br /> <br /> <br /> [https://statgen.research.bcm.edu/files/2018/06/info/schedule_berlin_complex_ngs_2018.docx Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_Complex_Trait_Application_2018.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_complex_traits_course_flyer_2018.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=ComplexNGS2018&diff=721 2018-08-17T23:05:27Z

<p>Suzanne: </p> <hr /> <div>__NOTITLE__<br /> <br /> =Complex Trait Analysis of Next Generation Sequence Data=<br /> June 18-22, 2018&lt;br /&gt;<br /> Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;<br /> Berlin, Germany<br /> <br /> ===General Information===<br /> The fourth annual course on Complex Trait Analysis of Next Generation Sequence Data will be held at the MDC in Berlin from June 18-22, 2018. The goal of the course is to teach both the theory and application of methods to analyze next generation sequence (NGS) data for human complex traits. Attendees will learn how to design studies, call variants from NGS data, analysis of population-, trio- and family-based sequence data and evaluation of variant functionality. Analyses will include performing complex trait rare variant association analysis for population and trio data. Exercises will be carried out using a variety of computer programs (GATK, IGV, Polyphen2, PSEQ, SEQPower, SEQSpark and Variant Association Tools (VAT)). TOPICS will be include: sequence alignment, calling variants from NGS data, quality control of NGS data, association testing framework for quantitative and qualitative traits (fixed effects, random effects and mixed models), rare variant association methods, estimating power and sample size for rare variant association studies, imputation of rare variants and their analysis, and evaluating variant conservation and functionality.<br /> <br /> ===Instructors===<br /> The instructors for the course are [https://www.bcm.edu/research/labs/center-for-statistical-genetics/ Suzanne Leal] (Baylor College of Medicine) and [http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/ Michael Nothnagel] (University of Cologne).<br /> <br /> ===More Information===<br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels. The maximum number of participants is 35.<br /> <br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> <br /> email: [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> ===Course Photos===<br /> [[File:Mich_Suz_NGS_Complex_2018.jpg |none|250x333pxthumb]][<br /> [File:course_NGS_Complex_2018.jpg|none|750x999px]]<br /> <br /> <br /> <br /> [https://statgen.research.bcm.edu/files/2018/06/info/schedule_berlin_complex_ngs_2018.docx Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_Complex_Trait_Application_2018.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_complex_traits_course_flyer_2018.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=ComplexNGS2018&diff=715 2018-08-17T21:33:30Z

<p>Suzanne: </p> <hr /> <div>__NOTITLE__<br /> <br /> =Complex Trait Analysis of Next Generation Sequence Data=<br /> June 18-22, 2018&lt;br /&gt;<br /> Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;<br /> Berlin, Germany<br /> <br /> ===General Information===<br /> The fourth annual course on Complex Trait Analysis of Next Generation Sequence Data will be held at the MDC in Berlin from June 18-22, 2018. The goal of the course is to teach both the theory and application of methods to analyze next generation sequence (NGS) data for human complex traits. Attendees will learn how to design studies, call variants from NGS data, analysis of population-, trio- and family-based sequence data and evaluation of variant functionality. Analyses will include performing complex trait rare variant association analysis for population and trio data. Exercises will be carried out using a variety of computer programs (GATK, IGV, Polyphen2, PSEQ, SEQPower, SEQSpark and Variant Association Tools (VAT)). TOPICS will be include: sequence alignment, calling variants from NGS data, quality control of NGS data, association testing framework for quantitative and qualitative traits (fixed effects, random effects and mixed models), rare variant association methods, estimating power and sample size for rare variant association studies, imputation of rare variants and their analysis, and evaluating variant conservation and functionality.<br /> <br /> ===Instructors===<br /> The instructors for the course are [https://www.bcm.edu/research/labs/center-for-statistical-genetics/ Suzanne Leal] (Baylor College of Medicine) and [http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/ Michael Nothnagel] (University of Cologne).<br /> <br /> ===More Information===<br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels. The maximum number of participants is 35.<br /> <br /> ===Course Photos===<br /> [[File:Mich_Suz_NGS_Complex_2018.jpg |None|250x333px]]<br /> Course Instructors Michael Nothnagel and Suzanne Leal<br /> [[File:course_NGS_Complex_2018.jpg|none|750x999px]]<br /> <br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> <br /> email: [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> <br /> [https://statgen.research.bcm.edu/files/2018/06/info/schedule_berlin_complex_ngs_2018.docx Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_Complex_Trait_Application_2018.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_complex_traits_course_flyer_2018.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=ComplexNGS2018&diff=714 2018-08-17T21:31:04Z

<p>Suzanne: </p> <hr /> <div>__NOTITLE__<br /> <br /> =Complex Trait Analysis of Next Generation Sequence Data=<br /> June 18-22, 2018&lt;br /&gt;<br /> Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;<br /> Berlin, Germany<br /> <br /> ===General Information===<br /> The fourth annual course on Complex Trait Analysis of Next Generation Sequence Data will be held at the MDC in Berlin from June 18-22, 2018. The goal of the course is to teach both the theory and application of methods to analyze next generation sequence (NGS) data for human complex traits. Attendees will learn how to design studies, call variants from NGS data, analysis of population-, trio- and family-based sequence data and evaluation of variant functionality. Analyses will include performing complex trait rare variant association analysis for population and trio data. Exercises will be carried out using a variety of computer programs (GATK, IGV, Polyphen2, PSEQ, SEQPower, SEQSpark and Variant Association Tools (VAT)). TOPICS will be include: sequence alignment, calling variants from NGS data, quality control of NGS data, association testing framework for quantitative and qualitative traits (fixed effects, random effects and mixed models), rare variant association methods, estimating power and sample size for rare variant association studies, imputation of rare variants and their analysis, and evaluating variant conservation and functionality.<br /> <br /> ===Instructors===<br /> The instructors for the course are [https://www.bcm.edu/research/labs/center-for-statistical-genetics/ Suzanne Leal] (Baylor College of Medicine) and [http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/ Michael Nothnagel] (University of Cologne).<br /> <br /> ===More Information===<br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels. The maximum number of participants is 35.<br /> <br /> ===Course Photos===<br /> [[File:Mich_Suz_NGS_Complex_2018.jpg |Michael Nothnagel and Suzanne Leal - Course Instructors|250x333px]]<br /> [[File:course_NGS_Complex_2018.jpg|none|750x999px]]<br /> <br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> <br /> email: [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> <br /> [https://statgen.research.bcm.edu/files/2018/06/info/schedule_berlin_complex_ngs_2018.docx Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_Complex_Trait_Application_2018.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_complex_traits_course_flyer_2018.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=ComplexNGS2018&diff=713 2018-08-17T21:30:27Z

<p>Suzanne: </p> <hr /> <div>__NOTITLE__<br /> <br /> =Complex Trait Analysis of Next Generation Sequence Data=<br /> June 18-22, 2018&lt;br /&gt;<br /> Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;<br /> Berlin, Germany<br /> <br /> ===General Information===<br /> The fourth annual course on Complex Trait Analysis of Next Generation Sequence Data will be held at the MDC in Berlin from June 18-22, 2018. The goal of the course is to teach both the theory and application of methods to analyze next generation sequence (NGS) data for human complex traits. Attendees will learn how to design studies, call variants from NGS data, analysis of population-, trio- and family-based sequence data and evaluation of variant functionality. Analyses will include performing complex trait rare variant association analysis for population and trio data. Exercises will be carried out using a variety of computer programs (GATK, IGV, Polyphen2, PSEQ, SEQPower, SEQSpark and Variant Association Tools (VAT)). TOPICS will be include: sequence alignment, calling variants from NGS data, quality control of NGS data, association testing framework for quantitative and qualitative traits (fixed effects, random effects and mixed models), rare variant association methods, estimating power and sample size for rare variant association studies, imputation of rare variants and their analysis, and evaluating variant conservation and functionality.<br /> <br /> ===Instructors===<br /> The instructors for the course are [https://www.bcm.edu/research/labs/center-for-statistical-genetics/ Suzanne Leal] (Baylor College of Medicine) and [http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/ Michael Nothnagel] (University of Cologne).<br /> <br /> ===More Information===<br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels. The maximum number of participants is 35.<br /> <br /> ===Course Photos===<br /> [[File:Mich_Suz_NGS_Complex_2018.jpg |Michael Nothnagel and Suzanne Leal - Course Instructors|750x999px]]<br /> [[File:course_NGS_Complex_2018.jpg|none|750x999px]]<br /> <br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> <br /> email: [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> <br /> [https://statgen.research.bcm.edu/files/2018/06/info/schedule_berlin_complex_ngs_2018.docx Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_Complex_Trait_Application_2018.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_complex_traits_course_flyer_2018.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=File:course_NGS_Complex_2018.jpg&diff=712 2018-08-17T21:28:12Z

<p>Suzanne: </p> <hr /> <div></div>

Suzanne http://statgen.us/index.php?title=File:Mich_Suz_NGS_Complex_2018.jpg&diff=711 2018-08-17T21:27:21Z

<p>Suzanne: </p> <hr /> <div></div>

Suzanne http://statgen.us/index.php?title=ComplexNGS2018&diff=710 2018-08-17T21:26:42Z

<p>Suzanne: </p> <hr /> <div>__NOTITLE__<br /> <br /> =Complex Trait Analysis of Next Generation Sequence Data=<br /> June 18-22, 2018&lt;br /&gt;<br /> Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;<br /> Berlin, Germany<br /> <br /> ===General Information===<br /> The fourth annual course on Complex Trait Analysis of Next Generation Sequence Data will be held at the MDC in Berlin from June 18-22, 2018. The goal of the course is to teach both the theory and application of methods to analyze next generation sequence (NGS) data for human complex traits. Attendees will learn how to design studies, call variants from NGS data, analysis of population-, trio- and family-based sequence data and evaluation of variant functionality. Analyses will include performing complex trait rare variant association analysis for population and trio data. Exercises will be carried out using a variety of computer programs (GATK, IGV, Polyphen2, PSEQ, SEQPower, SEQSpark and Variant Association Tools (VAT)). TOPICS will be include: sequence alignment, calling variants from NGS data, quality control of NGS data, association testing framework for quantitative and qualitative traits (fixed effects, random effects and mixed models), rare variant association methods, estimating power and sample size for rare variant association studies, imputation of rare variants and their analysis, and evaluating variant conservation and functionality.<br /> <br /> ===Instructors===<br /> The instructors for the course are [https://www.bcm.edu/research/labs/center-for-statistical-genetics/ Suzanne Leal] (Baylor College of Medicine) and [http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/ Michael Nothnagel] (University of Cologne).<br /> <br /> ===More Information===<br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels. The maximum number of participants is 35.<br /> <br /> ===Course Photos===<br /> [[File:Mich_Suz_NGS_Complex_2018.jpg |Michael Nothnagel and Suzanne Leal - Course Instructors]]<br /> [[File:course_NGS_Complex_2018.jpg|none|750x999px]]<br /> <br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> <br /> email: [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> <br /> [https://statgen.research.bcm.edu/files/2018/06/info/schedule_berlin_complex_ngs_2018.docx Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_Complex_Trait_Application_2018.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_complex_traits_course_flyer_2018.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=ComplexNGS2018&diff=709 2018-08-17T21:24:25Z

<p>Suzanne: </p> <hr /> <div>__NOTITLE__<br /> <br /> =Complex Trait Analysis of Next Generation Sequence Data=<br /> June 18-22, 2018&lt;br /&gt;<br /> Max Delbrück Center (MDC) for Molecular Medicine&lt;br /&gt;<br /> Berlin, Germany<br /> <br /> ===General Information===<br /> The fourth annual course on Complex Trait Analysis of Next Generation Sequence Data will be held at the MDC in Berlin from June 18-22, 2018. The goal of the course is to teach both the theory and application of methods to analyze next generation sequence (NGS) data for human complex traits. Attendees will learn how to design studies, call variants from NGS data, analysis of population-, trio- and family-based sequence data and evaluation of variant functionality. Analyses will include performing complex trait rare variant association analysis for population and trio data. Exercises will be carried out using a variety of computer programs (GATK, IGV, Polyphen2, PSEQ, SEQPower, SEQSpark and Variant Association Tools (VAT)). TOPICS will be include: sequence alignment, calling variants from NGS data, quality control of NGS data, association testing framework for quantitative and qualitative traits (fixed effects, random effects and mixed models), rare variant association methods, estimating power and sample size for rare variant association studies, imputation of rare variants and their analysis, and evaluating variant conservation and functionality.<br /> <br /> ===Instructors===<br /> The instructors for the course are [https://www.bcm.edu/research/labs/center-for-statistical-genetics/ Suzanne Leal] (Baylor College of Medicine) and [http://portal.ccg.uni-koeln.de/ccg/research/stat-gen-bioinformatics/ Michael Nothnagel] (University of Cologne).<br /> <br /> [[File:2017-03-Instructors.jpg|none|250x333px]]<br /> <br /> ===More Information===<br /> The cost of the 5-day course is 975 EUR for researchers from an academic institution, and 1,950 EUR for individuals from private (for profit) companies. This fee covers tuition, Monday evening wine and cheese party and course-related expenses (handouts, etc.) but not room, board or meals. Inexpensive housing is available for course participants at the MDC and nearby hotels. The maximum number of participants is 35.<br /> <br /> ===Course Photos===<br /> [[File:Mich_Suz_NGS_Complex_2018.jpg |Michael Nothnagel and Suzanne Leal - Course Instructors|750x999px]]<br /> [[File:course_NGS_Complex_2018.jpg|none|750x999px]]<br /> <br /> For additional information on the course please contact [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 Suzanne Leal]:<br /> <br /> <br /> email: [mailto:sleal@bcm.edu?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 sleal@bcm.edu] or [mailto:suzannemleal@gmail.com?subject=Complex%20Trait%20Analysis%20Course%20Berlin%202018 suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011&lt;br /&gt;<br /> Fax: +1 (713) 798-4012<br /> <br /> <br /> [https://statgen.research.bcm.edu/files/2018/06/info/schedule_berlin_complex_ngs_2018.docx Click here for course schedule]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_Complex_Trait_Application_2018.htm Click here for the application form]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/files/2018/06/info/Berlin_NGS_complex_traits_course_flyer_2018.pdf Click here for course flyer] (please post and distribute)&lt;br /&gt;<br /> [https://www.mdc-berlin.de/directions Click here for maps and directions to the MDC]&lt;br /&gt;<br /> [http://www.bbb-berlin.de/en/gaestehaeuser.html Click here for the information on MDC Housing]&lt;br /&gt;<br /> [http://www.visitberlin.de/en Click here for Berlin tourist information]&lt;br /&gt;<br /> [https://www.facebook.com/statgencourses/?ref=aymt_homepage_pane Click here to visit and like us on Facebook]<br /> <br /> [https://statgen.research.bcm.edu/index.php/Genassoc2017 Click here for photos and datasets for the Genetic Association Course – Berlin: June 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2017 Click here for photos and datasets for Analysis of NGS data for Complex Traits Course – Berlin: March 2017]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/NGSMendelian2016 Click here for photos and datasets for Analysis of NGS data for Mendelian Trait Course – Berlin: October-November 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/Genassoc2016 Click here for photos and data from Genetic Association Course – Berlin: September 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/ComplexNGS2016 Click here for photos and datasets from Analysis of Next Generation Sequence Data for Complex Traits Course – Berlin: July 2016]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015SeptMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Mendelian Traits - Berlin: September 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015JuneMDC Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [https://statgen.research.bcm.edu/index.php/2015MarchMDC Click here for photos and datasets from the Analysis of Next Generation Sequence Data Complex Traits - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=89 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=88 Click here for photos and datasets from the Complex Trait Analysis of NGS Data Course - Berlin: March 2015]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=87 Click here for photos and datasets from the Next Generation Sequence Data Analysis Course - Berlin: June 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=86 Click here for photos and datasets from the Genetic Association Course - Berlin: March 2014]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=85 Click here for photos and datasets from the Genetic Association Course - Berlin: June 2013]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=84 Click here for photos and datasets from the Basic Gene Mapping Course - Berlin: November 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=83 Click here for photos from the Genetic Association Course - Berlin: July 2012]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=81 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=80 Click here for photos from the Genetic Association Course - Berlin: July 2011]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=63 Click here for photos from the Basic Gene Mapping Course - Berlin: October 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=62 Click here for photos from the Genetic Association Course - Berlin: May 2010]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=90 Click here for photos from the Basic Gene Mapping Course - Berlin: November 2009]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=91 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2008]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=92 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2007]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=93 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2006]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=94 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2005]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=95 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2004]&lt;br /&gt;<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Click here for photos from the Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=Previous_Courses&diff=708 2018-08-17T20:44:24Z

<p>Suzanne: </p> <hr /> <div>==2016 Courses==<br /> * [[NGSMendelian2016|NGS Analysis of Mendelian Traits - MDC Berlin]]<br /> * [[Genassoc2016|Genetic Association -MDC Berlin]]<br /> * [[ComplexNGS2016|NGS Analysis of Complex Traits- MDC Berlin]]<br /> * [[Advgenemap2016|Advanced Gene Mapping - Rockefller NYC]]<br /> <br /> <br /> <br /> ==2015 Courses==<br /> * [[2015SeptMDC|NGS Analysis of Mendelian Traits - MDC Berlin]]<br /> * [[2015JuneMDC|Genetic Association- MDC Berlin]]<br /> * [[2015MarchMDC|NGS Analysis of Complex Traits -MDC Berlin]]<br /> * [[2015AdvancedGeneMapping|Advanced Gene Mapping - Rockefeller NYC]]<br /> <br /> ==2014 Course==<br /> ==2013 Course==<br /> ==2012 Course==<br /> ==2011 Course==<br /> ==2010 Course==<br /> ==2009 Course==<br /> ==2008 Course==<br /> ==2007 Course==<br /> ==2006 Course==<br /> ==2005 Course==<br /> ==2004 Course==<br /> ==2003 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=Previous_Courses&diff=707 2018-08-17T20:41:39Z

<p>Suzanne: </p> <hr /> <div>==2016 Courses==<br /> * [[NGSMendelian2016|NGS Analysis of Mendelian Traits]]<br /> * [[Genassoc2016|Genetic Association]]<br /> * [[ComplexNGS2016|NGS Analysis of Complex Traits]]<br /> * [[Advgenemap2016|Advanced Gene Mapping]]<br /> <br /> <br /> <br /> ==2015 Courses==<br /> * [[2015SeptMDC|NGS Analysis of Mendelian Traits]]<br /> * [[2015JuneMDC|Genetic Association]]<br /> * [[2015MarchMDC|NGS Analysis of Complex Traits]]<br /> * [[2015AdvancedGeneMapping|Advanced Gene Mapping]]<br /> <br /> ==2014 Course==<br /> ==2013 Course==<br /> ==2012 Course==<br /> ==2011 Course==<br /> ==2010 Course==<br /> ==2009 Course==<br /> ==2008 Course==<br /> ==2007 Course==<br /> ==2006 Course==<br /> ==2005 Course==<br /> ==2004 Course==<br /> ==2003 Course==<br /> * [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne http://statgen.us/index.php?title=MediaWiki:Sidebar&diff=706 2018-08-17T20:36:09Z

<p>Suzanne: </p> <hr /> <div>* About<br /> ** mainpage|Center for Statistical Genetics<br /> * 2019 Courses<br /> ** NGSMendelian2019|NGS Analysis of Mendelian Traits<br /> ** Genassoc2019|Genetic Association<br /> ** ComplexNGS2019|NGS Analysis of Complex Traits<br /> ** Advgenemap2019|Advanced Gene Mapping<br /> <br /> * 2018 Courses<br /> ** Genassoc2018|Genetic Association<br /> ** ComplexNGS2018|NGS Analysis of Complex Traits<br /> ** Advgenemap2018|Advanced Gene Mapping<br /> * 2017 Courses<br /> ** NGSMendelian2017|NGS Analysis of Mendelian Traits<br /> ** Genassoc2017|Genetic Association<br /> ** ComplexNGS2017|NGS Analysis of Complex Traits<br /> ** Advgenemap2017|Advanced Gene Mapping<br /> * Previous Courses<br /> ** Previous_Courses|Previous Course Pages<br /> <br /> * Software Tutorials<br /> ** Tutorials|Tutorials<br /> <br /> * Course Files<br /> ** CourseExerciseScripts|Course Exercise Commands<br /> * Software<br /> ** http://tigerwang.org/software/kbac|KBAC<br /> ** https://github.com/statgenetics/mendelprob|MendelProb<br /> ** https://code.google.com/p/phenoman/|PhenoMan<br /> ** http://bioinformatics.org/simped/rare/|RarePedSim<br /> ** http://www.bioinformatics.org/rv-gdt/|RV-GDT<br /> ** http://bioinformatics.org/rv-tdt/wiki/|RV-TDT<br /> ** http://www.bioinformatics.org/seqlink/|SEQLinkage<br /> ** http://www.bioinformatics.org/spower/start|SEQPower<br /> ** https://github.com/statgenetics/seqspark|SEQSpark<br /> ** http://bioinformatics.org/simped|SimPed<br /> ** https://code.google.com/p/simrare/|SimRare<br /> ** http://varianttools.sourceforge.net/Association/HomePage|Variant Association Tools<br /> ** VMT|Variant Mendelian Tools<br /> <br /> &lt;!--** recentchanges-url|recentchanges--&gt;<br /> &lt;!--** randompage-url|randompage--&gt;<br /> &lt;!--** helppage|help--&gt;<br /> &lt;!--* SEARCH--&gt;<br /> &lt;!--* TOOLBOX--&gt;<br /> &lt;!--* LANGUAGES--&gt;</div>

Suzanne http://statgen.us/index.php?title=Advgenemap2018&diff=705 2018-08-17T20:32:13Z

<p>Suzanne: </p> <hr /> <div>__NOTITLE__<br /> <br /> ==Advanced Gene Mapping Course==<br /> The Rockefeller University, New York&lt;br /&gt;<br /> Welch – The Great Hall&lt;br /&gt;<br /> Monday through Friday, January 22-26, 2018<br /> <br /> ===General Information===<br /> An advanced gene mapping course will be held in New York from Monday through Friday January 22-26, 2017. The cost of the 5-day course is $100 for student, academic and government researchers and $2,800 for researchers working in industry. This fee covers tuition and course related expenses (handouts, etc.) but not room and board.<br /> <br /> The course emphasis is analysis of complex human disease traits; concentrating on methods to detect rare and common variant associations. The course includes theory as well as practical exercises. The exercises will be carried out using a variety of computer programs including BEAM3, GERP, GotCloud, GenAbel, Matrix-eQTL, PLINK, PrediXCan, Polyphen-2, R, SEQPower, Variant Association Tools (VAT), etc. Topics include: Analysis of whole genome association studies; analysis of rare variants using next generation sequence data; analysis of qualitative and quantitative traits (population and family-based data); Linear mixed models; eQTL mapping; prediction models using RNAseq and array data; inferences for heritability estimation and prediction; functional predication of variant sites, variant annotation; variant calling, controlling for population substructure\admixture (principal components analysis\multidimensionality scaling); data quality control of genotype and sequence data; meta-analysis; gene x gene interaction; sample size estimation and evaluating power for common and rare variants.<br /> <br /> ===Course Instructors===<br /> The instructors for the course are: Goncalo Abecasis (University of Michigan), Heather Cordell (University of Newcastle), Nancy Cox (Vanderbilt University), Suzanne Leal (The Rockefeller University &amp; Baylor College of Medicine), and Shamil Sunyaev (Harvard University).<br /> <br /> <br /> <br /> ===More Information===<br /> The maximum number of participants is 30. The course will take place in the Great Hall in Welch at The Rockefeller University, which is equipped with PCs running under LINUX. The course is wheel chair accessible. All disabilities will be accommodated. Handicapped individuals are encouraged to apply.<br /> <br /> Four travel stipends of up to $1,000 each are available. Eligibility requirements are: (1) sufficient background and practical experience in statistical analysis of genetic data, and (2) demonstrated financial need. Preference for stipends will be given to pre-doctoral students and postdoctoral researchers. To apply for such a stipend, please attach a letter of request and enclose a letter of reference and proof of student or postdoctoral status.<br /> <br /> Knowledge genetic association analysis, genetic epidemiology and/or statistical genetics are screening criteria for selection of participants. Please describe your experience in detail in your application. We may contact you personally to discuss your application. Although experience of using LINUX is not necessary it is highly beneficial to have basic knowledge of this operating system before the start of the course.<br /> <br /> For additional information, please contact Katherine Montague:&lt;br /&gt;<br /> email: [mailto:montagk@rockefeller.edu montagk@rockefeller.edu]&lt;br /&gt;<br /> Tel: +1 (212) 327-7979<br /> <br /> For additional information on scientific program contact the course organizer Suzanne Leal:&lt;br /&gt;<br /> email: [mailto:sleal@bcm.edu sleal@bcm.edu] or [mailto:suzannemleal@gmail.com suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011<br /> <br /> ===Course Photo===<br /> [[File:Rock_Course_Photo_2018.jpg|none|750x999px]]<br /> <br /> <br /> [https://statgen.research.bcm.edu/files/2018/01/info/Application_Advanced_Gene_Mapping_Jan_2018.htm Click here for application form]<br /> <br /> [https://statgen.research.bcm.edu/files/2018/01/info/Rockefeller_advanced_course_flyer_2018.pdf Click here for course flyer] – Please Post and Distribute<br /> <br /> [https://statgen.research.bcm.edu/files/2018/01/info/adv_gene_mapping_schedule_2018.pdf Click here for course schedule]<br /> <br /> ===Lecture Handouts &amp; Practical Exercises===<br /> ====Gon&amp;ccedil;alo Abecasis====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Genome-wide_Analysis.pdf Genome-wide Analysis]<br /> ** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Genotype_Imputation.pdf Genotype Imputation]<br /> ** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Meta_Analysis.pdf Meta Analysis]<br /> ** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Sequence_Data.pdf Sequence Data]<br /> * Data Sets<br /> ** [https://statgen.research.bcm.edu/files/2018/01/abecasis/exercises.tar.gz Download]<br /> <br /> ====Heather Cordell====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2017/01/cordell/hjc-NY2016-GWAS-nopage.pdf Statistical Methods]<br /> ** [https://statgen.research.bcm.edu/files/2017/01/cordell/HJC-interactions2017-nopage.pdf Interactions]<br /> * Exercises<br /> ** [https://statgen.research.bcm.edu/files/2017/01/cordell/hjc-epistasis2015-ComputerPractical.pdf Interaction analysis using PLINK, CASSI, ORMDR and BEAM3]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/cordell/GxG_INTERACTION.tar.gz Download Dataset]<br /> <br /> ====Nancy Cox====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2018/01/cox/GeneticArchitecture_Transcriptomics_Cox_2018.pdf Integrative Approaches for Genetic Studies of Common Human Disease - Genetic Architecture andTranscriptomics]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/cox/DataIntegration_Cox_2018.pdf Integrative Approaches for Genetic Studies of Common Human Disease - Data Integration: Genome x Transcriptome x EHR]<br /> <br /> ====Suzanne Leal====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/Analysis_rare_variants_3.pdf Complex Trait Association Analysis of Rare Variants Obtained from Sequence Data: Population-Based Data]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/data_quality_control_1.pdf Data Quality Control]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/Trio_and_Family_Based_Association_analysis_4.pdf Family Base Association Analysis]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/NGS_variant_calling_QC_2.pdf NGS Quality Control]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/SEQSpark_5.pdf SEQSpark]<br /> * Exercises<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/PLINK_data_QC_V2_1.pdf PLINK GWAS Data QC]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/GWAS_Data_Controlling_for_Substructure_V2_2.pdf PLINK GWAS Association Analysis Controlling for Population Substructure]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/GenABEL_with_PLINK1.9_3.pdf GenABEL]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/rvtdt_exercise_v2.pdf RV-TDT]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/FunctionalAnnotation_exercise_2018v2.pdf Functional Annotation]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/SEQSpark_exercise_Final_v1.pdf SEQSpark]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/VAT_exercise_revised_nographs.pdf VAT]<br /> * Commands<br /> ** [[AdvGeneMap2018Commands|Exercise Commands]]<br /> * Exercise Datasets<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/exercises.tar.gz Download]<br /> <br /> ====Shamil Sunyaev====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2018/01/sunyaev/Rockefeller_pop_gen_2018_1_color.pdf Intro to population genetics]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/sunyaev/Rockefeller_complex_traits_2018_2_color.pdf Evolution, maintenance and allelic architecture of complex traits]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/sunyaev/Rockefeller_function_2018_3_color.pdf Annotating gene sequence variation]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/sunyaev/Rockefeller_mutation_2018_4_color.pdf Understanding human mutation]<br /> <br /> ===Course Image===<br /> [https://statgen.research.bcm.edu/files/2018/01/AdvancedGeneMapping.ova Download here]<br /> <br /> This course is supported by a grant from the National Institute of Health (NIH) - National Human Genome Research Institute (NHGRI).</div>

Suzanne http://statgen.us/index.php?title=Advgenemap2018&diff=704 2018-08-17T20:30:47Z

<p>Suzanne: </p> <hr /> <div>__NOTITLE__<br /> <br /> ==Advanced Gene Mapping Course==<br /> The Rockefeller University, New York&lt;br /&gt;<br /> Welch – The Great Hall&lt;br /&gt;<br /> Monday through Friday, January 22-26, 2018<br /> <br /> ===General Information===<br /> An advanced gene mapping course will be held in New York from Monday through Friday January 22-26, 2017. The cost of the 5-day course is $100 for student, academic and government researchers and $2,800 for researchers working in industry. This fee covers tuition and course related expenses (handouts, etc.) but not room and board.<br /> <br /> The course emphasis is analysis of complex human disease traits; concentrating on methods to detect rare and common variant associations. The course includes theory as well as practical exercises. The exercises will be carried out using a variety of computer programs including BEAM3, GERP, GotCloud, GenAbel, Matrix-eQTL, PLINK, PrediXCan, Polyphen-2, R, SEQPower, Variant Association Tools (VAT), etc. Topics include: Analysis of whole genome association studies; analysis of rare variants using next generation sequence data; analysis of qualitative and quantitative traits (population and family-based data); Linear mixed models; eQTL mapping; prediction models using RNAseq and array data; inferences for heritability estimation and prediction; functional predication of variant sites, variant annotation; variant calling, controlling for population substructure\admixture (principal components analysis\multidimensionality scaling); data quality control of genotype and sequence data; meta-analysis; gene x gene interaction; sample size estimation and evaluating power for common and rare variants.<br /> <br /> ===Course Instructors===<br /> The instructors for the course are: Goncalo Abecasis (University of Michigan), Heather Cordell (University of Newcastle), Nancy Cox (Vanderbilt University), Suzanne Leal (The Rockefeller University &amp; Baylor College of Medicine), and Shamil Sunyaev (Harvard University).<br /> <br /> <br /> <br /> ===More Information===<br /> The maximum number of participants is 30. The course will take place in the Great Hall in Welch at The Rockefeller University, which is equipped with PCs running under LINUX. The course is wheel chair accessible. All disabilities will be accommodated. Handicapped individuals are encouraged to apply.<br /> <br /> Four travel stipends of up to $1,000 each are available. Eligibility requirements are: (1) sufficient background and practical experience in statistical analysis of genetic data, and (2) demonstrated financial need. Preference for stipends will be given to pre-doctoral students and postdoctoral researchers. To apply for such a stipend, please attach a letter of request and enclose a letter of reference and proof of student or postdoctoral status.<br /> <br /> Knowledge genetic association analysis, genetic epidemiology and/or statistical genetics are screening criteria for selection of participants. Please describe your experience in detail in your application. We may contact you personally to discuss your application. Although experience of using LINUX is not necessary it is highly beneficial to have basic knowledge of this operating system before the start of the course.<br /> <br /> For additional information, please contact Katherine Montague:&lt;br /&gt;<br /> email: [mailto:montagk@rockefeller.edu montagk@rockefeller.edu]&lt;br /&gt;<br /> Tel: +1 (212) 327-7979<br /> <br /> For additional information on scientific program contact the course organizer Suzanne Leal:&lt;br /&gt;<br /> email: [mailto:sleal@bcm.edu sleal@bcm.edu] or [mailto:suzannemleal@gmail.com suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011<br /> <br /> ===Course Photo===<br /> [[File:Rock_Course_Photo_2018.jpg|none|500x666px]]<br /> <br /> <br /> [https://statgen.research.bcm.edu/files/2018/01/info/Application_Advanced_Gene_Mapping_Jan_2018.htm Click here for application form]<br /> <br /> [https://statgen.research.bcm.edu/files/2018/01/info/Rockefeller_advanced_course_flyer_2018.pdf Click here for course flyer] – Please Post and Distribute<br /> <br /> [https://statgen.research.bcm.edu/files/2018/01/info/adv_gene_mapping_schedule_2018.pdf Click here for course schedule]<br /> <br /> ===Lecture Handouts &amp; Practical Exercises===<br /> ====Gon&amp;ccedil;alo Abecasis====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Genome-wide_Analysis.pdf Genome-wide Analysis]<br /> ** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Genotype_Imputation.pdf Genotype Imputation]<br /> ** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Meta_Analysis.pdf Meta Analysis]<br /> ** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Sequence_Data.pdf Sequence Data]<br /> * Data Sets<br /> ** [https://statgen.research.bcm.edu/files/2018/01/abecasis/exercises.tar.gz Download]<br /> <br /> ====Heather Cordell====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2017/01/cordell/hjc-NY2016-GWAS-nopage.pdf Statistical Methods]<br /> ** [https://statgen.research.bcm.edu/files/2017/01/cordell/HJC-interactions2017-nopage.pdf Interactions]<br /> * Exercises<br /> ** [https://statgen.research.bcm.edu/files/2017/01/cordell/hjc-epistasis2015-ComputerPractical.pdf Interaction analysis using PLINK, CASSI, ORMDR and BEAM3]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/cordell/GxG_INTERACTION.tar.gz Download Dataset]<br /> <br /> ====Nancy Cox====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2018/01/cox/GeneticArchitecture_Transcriptomics_Cox_2018.pdf Integrative Approaches for Genetic Studies of Common Human Disease - Genetic Architecture andTranscriptomics]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/cox/DataIntegration_Cox_2018.pdf Integrative Approaches for Genetic Studies of Common Human Disease - Data Integration: Genome x Transcriptome x EHR]<br /> <br /> ====Suzanne Leal====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/Analysis_rare_variants_3.pdf Complex Trait Association Analysis of Rare Variants Obtained from Sequence Data: Population-Based Data]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/data_quality_control_1.pdf Data Quality Control]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/Trio_and_Family_Based_Association_analysis_4.pdf Family Base Association Analysis]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/NGS_variant_calling_QC_2.pdf NGS Quality Control]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/SEQSpark_5.pdf SEQSpark]<br /> * Exercises<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/PLINK_data_QC_V2_1.pdf PLINK GWAS Data QC]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/GWAS_Data_Controlling_for_Substructure_V2_2.pdf PLINK GWAS Association Analysis Controlling for Population Substructure]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/GenABEL_with_PLINK1.9_3.pdf GenABEL]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/rvtdt_exercise_v2.pdf RV-TDT]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/FunctionalAnnotation_exercise_2018v2.pdf Functional Annotation]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/SEQSpark_exercise_Final_v1.pdf SEQSpark]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/VAT_exercise_revised_nographs.pdf VAT]<br /> * Commands<br /> ** [[AdvGeneMap2018Commands|Exercise Commands]]<br /> * Exercise Datasets<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/exercises.tar.gz Download]<br /> <br /> ====Shamil Sunyaev====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2018/01/sunyaev/Rockefeller_pop_gen_2018_1_color.pdf Intro to population genetics]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/sunyaev/Rockefeller_complex_traits_2018_2_color.pdf Evolution, maintenance and allelic architecture of complex traits]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/sunyaev/Rockefeller_function_2018_3_color.pdf Annotating gene sequence variation]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/sunyaev/Rockefeller_mutation_2018_4_color.pdf Understanding human mutation]<br /> <br /> ===Course Image===<br /> [https://statgen.research.bcm.edu/files/2018/01/AdvancedGeneMapping.ova Download here]<br /> <br /> This course is supported by a grant from the National Institute of Health (NIH) - National Human Genome Research Institute (NHGRI).</div>

Suzanne http://statgen.us/index.php?title=File:Rock_Course_Photo_2018.jpg&diff=703 2018-08-17T20:29:33Z

<p>Suzanne: </p> <hr /> <div></div>

Suzanne http://statgen.us/index.php?title=Advgenemap2018&diff=702 2018-08-17T20:28:44Z

<p>Suzanne: </p> <hr /> <div>__NOTITLE__<br /> <br /> ==Advanced Gene Mapping Course==<br /> The Rockefeller University, New York&lt;br /&gt;<br /> Welch – The Great Hall&lt;br /&gt;<br /> Monday through Friday, January 22-26, 2018<br /> <br /> ===General Information===<br /> An advanced gene mapping course will be held in New York from Monday through Friday January 22-26, 2017. The cost of the 5-day course is $100 for student, academic and government researchers and $2,800 for researchers working in industry. This fee covers tuition and course related expenses (handouts, etc.) but not room and board.<br /> <br /> The course emphasis is analysis of complex human disease traits; concentrating on methods to detect rare and common variant associations. The course includes theory as well as practical exercises. The exercises will be carried out using a variety of computer programs including BEAM3, GERP, GotCloud, GenAbel, Matrix-eQTL, PLINK, PrediXCan, Polyphen-2, R, SEQPower, Variant Association Tools (VAT), etc. Topics include: Analysis of whole genome association studies; analysis of rare variants using next generation sequence data; analysis of qualitative and quantitative traits (population and family-based data); Linear mixed models; eQTL mapping; prediction models using RNAseq and array data; inferences for heritability estimation and prediction; functional predication of variant sites, variant annotation; variant calling, controlling for population substructure\admixture (principal components analysis\multidimensionality scaling); data quality control of genotype and sequence data; meta-analysis; gene x gene interaction; sample size estimation and evaluating power for common and rare variants.<br /> <br /> ===Course Instructors===<br /> The instructors for the course are: Goncalo Abecasis (University of Michigan), Heather Cordell (University of Newcastle), Nancy Cox (Vanderbilt University), Suzanne Leal (The Rockefeller University &amp; Baylor College of Medicine), and Shamil Sunyaev (Harvard University).<br /> <br /> <br /> ===More Information===<br /> The maximum number of participants is 30. The course will take place in the Great Hall in Welch at The Rockefeller University, which is equipped with PCs running under LINUX. The course is wheel chair accessible. All disabilities will be accommodated. Handicapped individuals are encouraged to apply.<br /> <br /> Four travel stipends of up to $1,000 each are available. Eligibility requirements are: (1) sufficient background and practical experience in statistical analysis of genetic data, and (2) demonstrated financial need. Preference for stipends will be given to pre-doctoral students and postdoctoral researchers. To apply for such a stipend, please attach a letter of request and enclose a letter of reference and proof of student or postdoctoral status.<br /> <br /> Knowledge genetic association analysis, genetic epidemiology and/or statistical genetics are screening criteria for selection of participants. Please describe your experience in detail in your application. We may contact you personally to discuss your application. Although experience of using LINUX is not necessary it is highly beneficial to have basic knowledge of this operating system before the start of the course.<br /> <br /> For additional information, please contact Katherine Montague:&lt;br /&gt;<br /> email: [mailto:montagk@rockefeller.edu montagk@rockefeller.edu]&lt;br /&gt;<br /> Tel: +1 (212) 327-7979<br /> <br /> For additional information on scientific program contact the course organizer Suzanne Leal:&lt;br /&gt;<br /> email: [mailto:sleal@bcm.edu sleal@bcm.edu] or [mailto:suzannemleal@gmail.com suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011<br /> <br /> ===Course Photo===<br /> [[File:Rock_Course_Photo_2018.jpg|none|250x333px]]<br /> <br /> <br /> [https://statgen.research.bcm.edu/files/2018/01/info/Application_Advanced_Gene_Mapping_Jan_2018.htm Click here for application form]<br /> <br /> [https://statgen.research.bcm.edu/files/2018/01/info/Rockefeller_advanced_course_flyer_2018.pdf Click here for course flyer] – Please Post and Distribute<br /> <br /> [https://statgen.research.bcm.edu/files/2018/01/info/adv_gene_mapping_schedule_2018.pdf Click here for course schedule]<br /> <br /> ===Lecture Handouts &amp; Practical Exercises===<br /> ====Gon&amp;ccedil;alo Abecasis====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Genome-wide_Analysis.pdf Genome-wide Analysis]<br /> ** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Genotype_Imputation.pdf Genotype Imputation]<br /> ** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Meta_Analysis.pdf Meta Analysis]<br /> ** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Sequence_Data.pdf Sequence Data]<br /> * Data Sets<br /> ** [https://statgen.research.bcm.edu/files/2018/01/abecasis/exercises.tar.gz Download]<br /> <br /> ====Heather Cordell====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2017/01/cordell/hjc-NY2016-GWAS-nopage.pdf Statistical Methods]<br /> ** [https://statgen.research.bcm.edu/files/2017/01/cordell/HJC-interactions2017-nopage.pdf Interactions]<br /> * Exercises<br /> ** [https://statgen.research.bcm.edu/files/2017/01/cordell/hjc-epistasis2015-ComputerPractical.pdf Interaction analysis using PLINK, CASSI, ORMDR and BEAM3]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/cordell/GxG_INTERACTION.tar.gz Download Dataset]<br /> <br /> ====Nancy Cox====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2018/01/cox/GeneticArchitecture_Transcriptomics_Cox_2018.pdf Integrative Approaches for Genetic Studies of Common Human Disease - Genetic Architecture andTranscriptomics]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/cox/DataIntegration_Cox_2018.pdf Integrative Approaches for Genetic Studies of Common Human Disease - Data Integration: Genome x Transcriptome x EHR]<br /> <br /> ====Suzanne Leal====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/Analysis_rare_variants_3.pdf Complex Trait Association Analysis of Rare Variants Obtained from Sequence Data: Population-Based Data]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/data_quality_control_1.pdf Data Quality Control]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/Trio_and_Family_Based_Association_analysis_4.pdf Family Base Association Analysis]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/NGS_variant_calling_QC_2.pdf NGS Quality Control]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/SEQSpark_5.pdf SEQSpark]<br /> * Exercises<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/PLINK_data_QC_V2_1.pdf PLINK GWAS Data QC]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/GWAS_Data_Controlling_for_Substructure_V2_2.pdf PLINK GWAS Association Analysis Controlling for Population Substructure]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/GenABEL_with_PLINK1.9_3.pdf GenABEL]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/rvtdt_exercise_v2.pdf RV-TDT]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/FunctionalAnnotation_exercise_2018v2.pdf Functional Annotation]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/SEQSpark_exercise_Final_v1.pdf SEQSpark]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/VAT_exercise_revised_nographs.pdf VAT]<br /> * Commands<br /> ** [[AdvGeneMap2018Commands|Exercise Commands]]<br /> * Exercise Datasets<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/exercises.tar.gz Download]<br /> <br /> ====Shamil Sunyaev====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2018/01/sunyaev/Rockefeller_pop_gen_2018_1_color.pdf Intro to population genetics]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/sunyaev/Rockefeller_complex_traits_2018_2_color.pdf Evolution, maintenance and allelic architecture of complex traits]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/sunyaev/Rockefeller_function_2018_3_color.pdf Annotating gene sequence variation]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/sunyaev/Rockefeller_mutation_2018_4_color.pdf Understanding human mutation]<br /> <br /> ===Course Image===<br /> [https://statgen.research.bcm.edu/files/2018/01/AdvancedGeneMapping.ova Download here]<br /> <br /> This course is supported by a grant from the National Institute of Health (NIH) - National Human Genome Research Institute (NHGRI).</div>

Suzanne http://statgen.us/index.php?title=File:Rock_photo_2018.jpg&diff=701 2018-08-17T20:26:58Z

<p>Suzanne: </p> <hr /> <div></div>

Suzanne http://statgen.us/index.php?title=Advgenemap2018&diff=700 2018-08-17T20:24:22Z

<p>Suzanne: </p> <hr /> <div>__NOTITLE__<br /> <br /> ==Advanced Gene Mapping Course==<br /> The Rockefeller University, New York&lt;br /&gt;<br /> Welch – The Great Hall&lt;br /&gt;<br /> Monday through Friday, January 22-26, 2018<br /> <br /> ===General Information===<br /> An advanced gene mapping course will be held in New York from Monday through Friday January 22-26, 2017. The cost of the 5-day course is $100 for student, academic and government researchers and $2,800 for researchers working in industry. This fee covers tuition and course related expenses (handouts, etc.) but not room and board.<br /> <br /> The course emphasis is analysis of complex human disease traits; concentrating on methods to detect rare and common variant associations. The course includes theory as well as practical exercises. The exercises will be carried out using a variety of computer programs including BEAM3, GERP, GotCloud, GenAbel, Matrix-eQTL, PLINK, PrediXCan, Polyphen-2, R, SEQPower, Variant Association Tools (VAT), etc. Topics include: Analysis of whole genome association studies; analysis of rare variants using next generation sequence data; analysis of qualitative and quantitative traits (population and family-based data); Linear mixed models; eQTL mapping; prediction models using RNAseq and array data; inferences for heritability estimation and prediction; functional predication of variant sites, variant annotation; variant calling, controlling for population substructure\admixture (principal components analysis\multidimensionality scaling); data quality control of genotype and sequence data; meta-analysis; gene x gene interaction; sample size estimation and evaluating power for common and rare variants.<br /> <br /> ===Course Instructors===<br /> The instructors for the course are: Goncalo Abecasis (University of Michigan), Heather Cordell (University of Newcastle), Nancy Cox (Vanderbilt University), Suzanne Leal (The Rockefeller University &amp; Baylor College of Medicine), and Shamil Sunyaev (Harvard University).<br /> <br /> <br /> ===More Information===<br /> The maximum number of participants is 30. The course will take place in the Great Hall in Welch at The Rockefeller University, which is equipped with PCs running under LINUX. The course is wheel chair accessible. All disabilities will be accommodated. Handicapped individuals are encouraged to apply.<br /> <br /> Four travel stipends of up to $1,000 each are available. Eligibility requirements are: (1) sufficient background and practical experience in statistical analysis of genetic data, and (2) demonstrated financial need. Preference for stipends will be given to pre-doctoral students and postdoctoral researchers. To apply for such a stipend, please attach a letter of request and enclose a letter of reference and proof of student or postdoctoral status.<br /> <br /> Knowledge genetic association analysis, genetic epidemiology and/or statistical genetics are screening criteria for selection of participants. Please describe your experience in detail in your application. We may contact you personally to discuss your application. Although experience of using LINUX is not necessary it is highly beneficial to have basic knowledge of this operating system before the start of the course.<br /> <br /> For additional information, please contact Katherine Montague:&lt;br /&gt;<br /> email: [mailto:montagk@rockefeller.edu montagk@rockefeller.edu]&lt;br /&gt;<br /> Tel: +1 (212) 327-7979<br /> <br /> For additional information on scientific program contact the course organizer Suzanne Leal:&lt;br /&gt;<br /> email: [mailto:sleal@bcm.edu sleal@bcm.edu] or [mailto:suzannemleal@gmail.com suzannemleal@gmail.com]&lt;br /&gt;<br /> Tel: +1 (713) 798-4011<br /> <br /> ===Course Photo===<br /> [[File:IMG_1030.jpg|none|250x333px]]<br /> <br /> <br /> [https://statgen.research.bcm.edu/files/2018/01/info/Application_Advanced_Gene_Mapping_Jan_2018.htm Click here for application form]<br /> <br /> [https://statgen.research.bcm.edu/files/2018/01/info/Rockefeller_advanced_course_flyer_2018.pdf Click here for course flyer] – Please Post and Distribute<br /> <br /> [https://statgen.research.bcm.edu/files/2018/01/info/adv_gene_mapping_schedule_2018.pdf Click here for course schedule]<br /> <br /> ===Lecture Handouts &amp; Practical Exercises===<br /> ====Gon&amp;ccedil;alo Abecasis====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Genome-wide_Analysis.pdf Genome-wide Analysis]<br /> ** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Genotype_Imputation.pdf Genotype Imputation]<br /> ** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Meta_Analysis.pdf Meta Analysis]<br /> ** [https://statgen.research.bcm.edu/files/2017/01/abecasis/presentation/Sequence_Data.pdf Sequence Data]<br /> * Data Sets<br /> ** [https://statgen.research.bcm.edu/files/2018/01/abecasis/exercises.tar.gz Download]<br /> <br /> ====Heather Cordell====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2017/01/cordell/hjc-NY2016-GWAS-nopage.pdf Statistical Methods]<br /> ** [https://statgen.research.bcm.edu/files/2017/01/cordell/HJC-interactions2017-nopage.pdf Interactions]<br /> * Exercises<br /> ** [https://statgen.research.bcm.edu/files/2017/01/cordell/hjc-epistasis2015-ComputerPractical.pdf Interaction analysis using PLINK, CASSI, ORMDR and BEAM3]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/cordell/GxG_INTERACTION.tar.gz Download Dataset]<br /> <br /> ====Nancy Cox====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2018/01/cox/GeneticArchitecture_Transcriptomics_Cox_2018.pdf Integrative Approaches for Genetic Studies of Common Human Disease - Genetic Architecture andTranscriptomics]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/cox/DataIntegration_Cox_2018.pdf Integrative Approaches for Genetic Studies of Common Human Disease - Data Integration: Genome x Transcriptome x EHR]<br /> <br /> ====Suzanne Leal====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/Analysis_rare_variants_3.pdf Complex Trait Association Analysis of Rare Variants Obtained from Sequence Data: Population-Based Data]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/data_quality_control_1.pdf Data Quality Control]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/Trio_and_Family_Based_Association_analysis_4.pdf Family Base Association Analysis]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/NGS_variant_calling_QC_2.pdf NGS Quality Control]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/SEQSpark_5.pdf SEQSpark]<br /> * Exercises<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/PLINK_data_QC_V2_1.pdf PLINK GWAS Data QC]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/GWAS_Data_Controlling_for_Substructure_V2_2.pdf PLINK GWAS Association Analysis Controlling for Population Substructure]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/GenABEL_with_PLINK1.9_3.pdf GenABEL]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/rvtdt_exercise_v2.pdf RV-TDT]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/FunctionalAnnotation_exercise_2018v2.pdf Functional Annotation]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/SEQSpark_exercise_Final_v1.pdf SEQSpark]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/VAT_exercise_revised_nographs.pdf VAT]<br /> * Commands<br /> ** [[AdvGeneMap2018Commands|Exercise Commands]]<br /> * Exercise Datasets<br /> ** [https://statgen.research.bcm.edu/files/2018/01/leal/exercises.tar.gz Download]<br /> <br /> ====Shamil Sunyaev====<br /> * Presentations<br /> ** [https://statgen.research.bcm.edu/files/2018/01/sunyaev/Rockefeller_pop_gen_2018_1_color.pdf Intro to population genetics]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/sunyaev/Rockefeller_complex_traits_2018_2_color.pdf Evolution, maintenance and allelic architecture of complex traits]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/sunyaev/Rockefeller_function_2018_3_color.pdf Annotating gene sequence variation]<br /> ** [https://statgen.research.bcm.edu/files/2018/01/sunyaev/Rockefeller_mutation_2018_4_color.pdf Understanding human mutation]<br /> <br /> ===Course Image===<br /> [https://statgen.research.bcm.edu/files/2018/01/AdvancedGeneMapping.ova Download here]<br /> <br /> This course is supported by a grant from the National Institute of Health (NIH) - National Human Genome Research Institute (NHGRI).</div>

Suzanne http://statgen.us/index.php?title=Previous_Courses&diff=696 2018-08-17T18:29:14Z

<p>Suzanne: </p> <hr /> <div>==2016 Courses==<br /> * [[NGSMendelian2016|NGS Analysis of Mendelian Traits]]<br /> * [[Genassoc2016|Genetic Association]]<br /> * [[ComplexNGS2016|NGS Analysis of Complex Traits]]<br /> * [[Advgenemap2016|Advanced Gene Mapping]]<br /> <br /> <br /> <br /> ==2015 Courses==<br /> * [[2015SeptMDC|NGS Analysis of Mendelian Traits]]<br /> * [[2015JuneMDC|Genetic Association]]<br /> * [[2015MarchMDC|NGS Analysis of Complex Traits]]<br /> * [[2015AdvancedGeneMapping|Advanced Gene Mapping]]<br /> <br /> ==2014 Course==<br /> ==2013 Course==<br /> ==2012 Course==<br /> ==2011 Course==<br /> ==2010 Course==<br /> ==2009 Course==<br /> ==2008 Course==<br /> ==2007 Course==<br /> ==2006 Course==<br /> ==2005 Course==<br /> ==2004 Course==<br /> ==2003 Course==</div>

Suzanne http://statgen.us/index.php?title=Previous_Courses&diff=695 2018-08-16T23:25:31Z

<p>Suzanne: </p> <hr /> <div>==2016 Courses==<br /> * [[NGSMendelian2016|NGS Analysis of Mendelian Traits]]<br /> * [[Genassoc2016|Genetic Association]]<br /> * [[ComplexNGS2016|NGS Analysis of Complex Traits]]<br /> * [[Advgenemap2016|Advanced Gene Mapping]]<br /> <br /> <br /> <br /> ==2015 Courses==<br /> * [[2015SeptMDC|NGS Analysis of Mendelian Traits]]<br /> * [[2015JuneMDC|Genetic Association]]<br /> * [[2015MarchMDC|NGS Analysis of Complex Traits]]<br /> * [[2015AdvancedGeneMapping|Advanced Gene Mapping]]<br /> <br /> ==2003 Course==</div>

Suzanne http://statgen.us/index.php?title=Previous_Courses&diff=694 2018-08-16T23:25:05Z

<p>Suzanne: </p> <hr /> <div>==2016 Courses==<br /> * [[NGSMendelian2016|NGS Analysis of Mendelian Traits]]<br /> * [[Genassoc2016|Genetic Association]]<br /> * [[ComplexNGS2016|NGS Analysis of Complex Traits]]<br /> * [[Advgenemap2016|Advanced Gene Mapping]]<br /> <br /> <br /> <br /> ==2015 Courses==<br /> * [[2015SeptMDC|NGS Analysis of Mendelian Traits]]<br /> * [[2015JuneMDC|Genetic Association]]<br /> * [[2015MarchMDC|NGS Analysis of Complex Traits]]<br /> * [[2015AdvancedGeneMapping|Advanced Gene Mapping]]<br /> <br /> ==2003 Course==<br /> *[[Basic Gene Mapping Course - Berlin: July 2003]]</div>

Suzanne http://statgen.us/index.php?title=Previous_Courses&diff=693 2018-08-16T23:22:40Z

<p>Suzanne: </p> <hr /> <div>==2016 Courses==<br /> * [[NGSMendelian2016|NGS Analysis of Mendelian Traits]]<br /> * [[Genassoc2016|Genetic Association]]<br /> * [[ComplexNGS2016|NGS Analysis of Complex Traits]]<br /> * [[Advgenemap2016|Advanced Gene Mapping]]<br /> <br /> <br /> <br /> ==2015 Courses==<br /> * [[2015SeptMDC|NGS Analysis of Mendelian Traits]]<br /> * [[2015JuneMDC|Genetic Association]]<br /> * [[2015MarchMDC|NGS Analysis of Complex Traits]]<br /> * [[2015AdvancedGeneMapping|Advanced Gene Mapping]]<br /> <br /> ==2003 Course==</div>

Suzanne http://statgen.us/index.php?title=Previous_Courses&diff=692 2018-08-16T23:21:37Z

<p>Suzanne: </p> <hr /> <div>==2016 Courses==<br /> * [[NGSMendelian2016|NGS Analysis of Mendelian Traits]]<br /> * [[Genassoc2016|Genetic Association]]<br /> * [[ComplexNGS2016|NGS Analysis of Complex Traits]]<br /> * [[Advgenemap2016|Advanced Gene Mapping]]<br /> <br /> <br /> <br /> ==2015 Courses==<br /> * [[2015SeptMDC|NGS Analysis of Mendelian Traits]]<br /> * [[2015JuneMDC|Genetic Association]]<br /> * [[2015MarchMDC|NGS Analysis of Complex Traits]]<br /> * [[2015AdvancedGeneMapping|Advanced Gene Mapping]<br /> <br /> <br /> ]==2003 Course==<br /> [http://portal.ccg.uni-koeln.de/ccg/index.php?id=96 Basic Gene Mapping Course - Berlin: July 2003]</div>

Suzanne