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2015AdvancedGeneMapping - Revision history
2026-04-05T18:25:12Z
Revision history for this page on the wiki
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Serveradmin: /* Shamil Sunyaev */
2016-06-07T15:09:08Z
<p><span dir="auto"><span class="autocomment">Shamil Sunyaev</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 15:09, 7 June 2016</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>====Shamil Sunyaev====</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>====Shamil Sunyaev====</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Presentations</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Presentations</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<del class="diffchange diffchange-inline">201501</del>/sunyaev/handouts/Rockefeller_pop_gen_2014.pdf Population genetics]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<ins class="diffchange diffchange-inline">2015/02</ins>/sunyaev/handouts/Rockefeller_pop_gen_2014.pdf Population genetics]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<del class="diffchange diffchange-inline">201501</del>/sunyaev/handouts/Rockefeller_mutation_2015.pdf Mutation]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<ins class="diffchange diffchange-inline">2015/02</ins>/sunyaev/handouts/Rockefeller_mutation_2015.pdf Mutation]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<del class="diffchange diffchange-inline">201501</del>/sunyaev/handouts/Rockefeller_complex_traits_2015.pdf Complex traits]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<ins class="diffchange diffchange-inline">2015/02</ins>/sunyaev/handouts/Rockefeller_complex_traits_2015.pdf Complex traits]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Exercises</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Exercises</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<del class="diffchange diffchange-inline">201501</del>/sunyaev/handouts/Rockefeller_tutorial.pdf Annotation tutorial]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<ins class="diffchange diffchange-inline">2015/02</ins>/sunyaev/handouts/Rockefeller_tutorial.pdf Annotation tutorial]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div><!--</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div><!--</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Data-sets Used During the Course===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Data-sets Used During the Course===</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* [http://statgen.us/files/<del class="diffchange diffchange-inline">201501</del>/exercises/cordell.tar.bz2 Heather Cordell's Data Sets]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* [http://statgen.us/files/<ins class="diffchange diffchange-inline">2015/02/cordell</ins>/exercises/cordell.tar.bz2 Heather Cordell's Data Sets]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* [http://statgen.us/files/<del class="diffchange diffchange-inline">201501</del>/exercises/francioli.tar.bz2 Laurent Francioli's Data Sets]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* [http://statgen.us/files/<ins class="diffchange diffchange-inline">2015/02/francioli</ins>/exercises/francioli.tar.bz2 Laurent Francioli's Data Sets]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* [http://statgen.us/files/<del class="diffchange diffchange-inline">201501</del>/exercises/leal.tar.bz2 Suzanne Leal's Data Sets]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* [http://statgen.us/files/<ins class="diffchange diffchange-inline">2015/02/leal</ins>/exercises/leal.tar.bz2 Suzanne Leal's Data Sets]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* [http://statgen.us/files/<del class="diffchange diffchange-inline">201501</del>/exercises/neale.tar.bz2 Ben Neale's Data Sets]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* [http://statgen.us/files/<ins class="diffchange diffchange-inline">2015/02/neale</ins>/exercises/neale.tar.bz2 Ben Neale's Data Sets]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>In order to obtain a particular data set, please follow the following steps:</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>In order to obtain a particular data set, please follow the following steps:</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div># Change to this subdirectory (''cd'' command) and proceed with the exercise.</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div># Change to this subdirectory (''cd'' command) and proceed with the exercise.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>--></div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>--></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Software===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Software===</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* [http://annovar.openbioinformatics.org/en/latest/ ANNOVAR]</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* [http://annovar.openbioinformatics.org/en/latest/ ANNOVAR]</div></td></tr>
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Serveradmin
http://statgen.us/index.php?title=2015AdvancedGeneMapping&diff=43&oldid=prev
Serveradmin: /* Ben Neale */
2016-06-07T15:07:36Z
<p><span dir="auto"><span class="autocomment">Ben Neale</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 15:07, 7 June 2016</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Presentations</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Presentations</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* [http://statgen.us/files/2015/02/neale/handouts/Neale_Rockefeller_course_2015.pdf Neale lectures combined]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">*</ins>* [http://statgen.us/files/2015/02/neale/handouts/Neale_Rockefeller_course_2015.pdf Neale lectures combined]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Exercises</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Exercises</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/2015/02/neale/exercises/neale.tar.bz2 Download Data Sets] (decompress using "tar jxvf neale.tar.bz2")</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/2015/02/neale/exercises/neale.tar.bz2 Download Data Sets] (decompress using "tar jxvf neale.tar.bz2")</div></td></tr>
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Serveradmin
http://statgen.us/index.php?title=2015AdvancedGeneMapping&diff=42&oldid=prev
Serveradmin: /* Ben Neale */
2016-06-07T15:07:13Z
<p><span dir="auto"><span class="autocomment">Ben Neale</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 15:07, 7 June 2016</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l54" >Line 54:</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Presentations</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Presentations</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* [http://statgen.us/files/<del class="diffchange diffchange-inline">201501</del>/neale/Neale_Rockefeller_course_2015.pdf Neale lectures combined]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* [http://statgen.us/files/<ins class="diffchange diffchange-inline">2015/02</ins>/neale<ins class="diffchange diffchange-inline">/handouts</ins>/Neale_Rockefeller_course_2015.pdf Neale lectures combined]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Exercises</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Exercises</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<del class="diffchange diffchange-inline">201501</del>/exercises/neale.tar.bz2 Download Data Sets] (decompress using "tar jxvf neale.tar.bz2")</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<ins class="diffchange diffchange-inline">2015/02/neale</ins>/exercises/neale.tar.bz2 Download Data Sets] (decompress using "tar jxvf neale.tar.bz2")</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>====Shamil Sunyaev====</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>====Shamil Sunyaev====</div></td></tr>
</table>
Serveradmin
http://statgen.us/index.php?title=2015AdvancedGeneMapping&diff=41&oldid=prev
Serveradmin: /* Suzanne Leal */
2016-06-07T15:05:22Z
<p><span dir="auto"><span class="autocomment">Suzanne Leal</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 15:05, 7 June 2016</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Presentations</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Presentations</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<del class="diffchange diffchange-inline">201501</del>/leal/<del class="diffchange diffchange-inline">lectures</del>/analysis_rare_variants.pdf Complex Trait Associaton Analysis of Rare Variants Obtained from Sequence Data]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<ins class="diffchange diffchange-inline">2015/02</ins>/leal/<ins class="diffchange diffchange-inline">handouts</ins>/analysis_rare_variants.pdf Complex Trait Associaton Analysis of Rare Variants Obtained from Sequence Data]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<del class="diffchange diffchange-inline">201501</del>/leal/<del class="diffchange diffchange-inline">lectures</del>/data_quality_control_2_5_15.pptx Data Quality Control]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<ins class="diffchange diffchange-inline">2015/02</ins>/leal/<ins class="diffchange diffchange-inline">handouts</ins>/data_quality_control_2_5_15.pptx Data Quality Control]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<del class="diffchange diffchange-inline">201501</del>/leal/<del class="diffchange diffchange-inline">lectures</del>/power_analysis_2_5_15.pdf Sample Size and Power Analysis For Associaton Studies Analysis of Individual Variants]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<ins class="diffchange diffchange-inline">2015/02</ins>/leal/<ins class="diffchange diffchange-inline">handouts</ins>/power_analysis_2_5_15.pdf Sample Size and Power Analysis For Associaton Studies Analysis of Individual Variants]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<del class="diffchange diffchange-inline">201501</del>/leal/<del class="diffchange diffchange-inline">lectures</del>/power_analysis_rare_variants_2_5_15.pdf Power Analysis for Rare Variants - Aggregate Analysis]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<ins class="diffchange diffchange-inline">2015/02</ins>/leal/<ins class="diffchange diffchange-inline">handouts</ins>/power_analysis_rare_variants_2_5_15.pdf Power Analysis for Rare Variants - Aggregate Analysis]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Exercises</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Exercises</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/2015/02/leal/exercises/Armitage_sample_size_Rockefeller_1_5_15.pdf Sample Size Calculation]</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/2015/02/leal/exercises/Armitage_sample_size_Rockefeller_1_5_15.pdf Sample Size Calculation]</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/2015/02/leal/exercises/VAT-2015NYC.pdf Variant Association Tools]</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/2015/02/leal/exercises/VAT-2015NYC.pdf Variant Association Tools]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/2015/02/exercises/leal.tar.bz2 Download Data Sets] (decompress using "tar jxvf leal.tar.bz2")</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/2015/02<ins class="diffchange diffchange-inline">/leal</ins>/exercises/leal.tar.bz2 Download Data Sets] (decompress using "tar jxvf leal.tar.bz2")</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>====Ben Neale====</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>====Ben Neale====</div></td></tr>
</table>
Serveradmin
http://statgen.us/index.php?title=2015AdvancedGeneMapping&diff=40&oldid=prev
Serveradmin: /* Laurent Francioli */
2016-06-07T14:59:28Z
<p><span dir="auto"><span class="autocomment">Laurent Francioli</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 14:59, 7 June 2016</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Exercises</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Exercises</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<del class="diffchange diffchange-inline">201501</del>/francioli/handouts/01_variant_calling_exercices.pdf Variant calling exercises]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>** [http://statgen.us/files/<ins class="diffchange diffchange-inline">2015/02</ins>/francioli/handouts/01_variant_calling_exercices.pdf Variant calling exercises]</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"><!--</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">* [http://statgen.us/files/201501/francioli/handouts.tar.bz2 tarball download]</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">--></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>====Suzanne Leal====</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>====Suzanne Leal====</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Presentations</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>* Presentations</div></td></tr>
</table>
Serveradmin
http://statgen.us/index.php?title=2015AdvancedGeneMapping&diff=39&oldid=prev
Serveradmin: /* Heather Cordell */
2016-06-07T14:57:18Z
<p><span dir="auto"><span class="autocomment">Heather Cordell</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 14:57, 7 June 2016</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>====Laurent Francioli====</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>====Laurent Francioli====</div></td></tr>
</table>
Serveradmin
http://statgen.us/index.php?title=2015AdvancedGeneMapping&diff=38&oldid=prev
Serveradmin: /* Heather Cordell */
2016-06-07T14:56:40Z
<p><span dir="auto"><span class="autocomment">Heather Cordell</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 14:56, 7 June 2016</td>
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Serveradmin
http://statgen.us/index.php?title=2015AdvancedGeneMapping&diff=13&oldid=prev
Serveradmin: Created page with "__NOTITLE__ ==Advanced Gene Mapping Course== The Rockefeller University, New York, Monday through Friday, Feb. 9-13, 2015 ===General Information=== The course emphasis is an..."
2016-05-05T18:00:05Z
<p>Created page with "__NOTITLE__ ==Advanced Gene Mapping Course== The Rockefeller University, New York, Monday through Friday, Feb. 9-13, 2015 ===General Information=== The course emphasis is an..."</p>
<p><b>New page</b></p><div>__NOTITLE__<br />
<br />
==Advanced Gene Mapping Course==<br />
The Rockefeller University, New York, Monday through Friday, Feb. 9-13, 2015<br />
<br />
===General Information===<br />
The course emphasis is analysis of complex human disease traits; concentrating on methods to detect rare and common variant associations. The course includes theory as well as practical exercises.<br />
<br />
Topics include: Analysis of whole genome association studies; analysis of rare variants using next generation sequence and exome chip data; rare variant association tests; analysis of qualitative and quantitative traits (population and family-based data); detection of de novo variants and significance testing; Mendelian randomization; determining whether inflated test statistics observed with large scale GWAS meta-analysis is driven by confounding or by polygenic inheritance using the LD score approached; functional predication of variant sites; variant annotation, sequence read alignment and variant calling, controlling for population substructure/admixture (principal components analysis/multidimensionality scaling); data quality control of genotype and sequence data; detection of gene x gene interaction; sample size estimation and evaluating power for common and rare variants.<br />
<br />
The exercises will be carried out using a variety of computer programs including ANNOVAR, GATK,GenAbel, GERP, PLINK, R, SIFT, SEQPower, Variant Association Tools (VAT), Polyphen-2, etc.<br />
<br />
[http://statgen.us/files/2015/02/Advanced_Gene_Mapping_Course_Schedule_2015.pdf Course Schedule]<br />
<br />
===Course Instructors===<br />
The instructors for the course are: [http://www.staff.ncl.ac.uk/heather.cordell/ Heather Cordell] (University of Newcastle), Laurent Francioli (University Medical Center Utrecht), [https://www.bcm.edu/research/labs/center-for-statistical-genetics Suzanne Leal] (The Rockefeller University & Baylor College of Medicine), [https://www.broadinstitute.org/scientific-community/science/programs/psychiatric-disease/stanley-center-psychiatric-research/benjam Ben Neale] (Broad Institute and Harvard University) and [http://www.brighamandwomens.org/research/depts/medicine/genetics/pis/Sunyaev/default.aspx Shamil Sunyaev] (Harvard University).<br />
<br />
===Lecture Handouts & Practical Exercises===<br />
====Heather Cordell====<br />
* Presentations<br />
** [http://statgen.us/files/201501/cordell/handouts/hjc-interactions2015-3persheet.pdf Gene-Gene and Gene-Environment interactions]<br />
** [http://statgen.us/files/201501/cordell/handouts/NY2015-GWAS-3persheet.pdf Genome-wide association studies]<br />
* Exercises<br />
** [http://statgen.us/files/201501/cordell/handouts/Practical-epistasis2014-pdf.pdf Interaction analysis]<br />
** [http://statgen.us/files/201501/exercises/cordell.tar.bz2 Download Data Sets] (decompress using "tar jxvf cordell.tar.bz2")<br />
<br />
<!--<br />
* [http://statgen.us/files/201501/cordell/handouts.tar.bz2 tarball download]<br />
--><br />
====Laurent Francioli====<br />
* Presentations<br />
** [http://statgen.us/files/2015/02/francioli/handouts/01-NGS.pdf Next-generation sequencing]<br />
** [http://statgen.us/files/2015/02/francioli/handouts/02-Alignment.pdf Alignment]<br />
** [http://statgen.us/files/2015/02/francioli/handouts/03-SNP_and_Indel_Calling.pdf SNP and Indel Calling]<br />
** [http://statgen.us/files/2015/02/francioli/handouts/04-Variant_Filtering.pdf Variant filtering]<br />
** [http://statgen.us/files/2015/02/francioli/handouts/05-Genotyping_NGS.pdf Genotyping NGS data]<br />
** [http://statgen.us/files/2015/02/francioli/handouts/06-VCF_and_IGV.pdf NGS variants output and visualizaion: VCF and IGV]<br />
* Exercises<br />
** [http://statgen.us/files/201501/francioli/handouts/01_variant_calling_exercices.pdf Variant calling exercises]<br />
** [http://statgen.us/files/201501/exercises/francioli.tar.bz2 Download Data Sets] (decompress using "tar jxvf francioli.tar.bz2")<br />
<br />
<!--<br />
* [http://statgen.us/files/201501/francioli/handouts.tar.bz2 tarball download]<br />
--><br />
====Suzanne Leal====<br />
* Presentations<br />
** [http://statgen.us/files/201501/leal/lectures/analysis_rare_variants.pdf Complex Trait Associaton Analysis of Rare Variants Obtained from Sequence Data]<br />
** [http://statgen.us/files/201501/leal/lectures/data_quality_control_2_5_15.pptx Data Quality Control]<br />
** [http://statgen.us/files/201501/leal/lectures/power_analysis_2_5_15.pdf Sample Size and Power Analysis For Associaton Studies Analysis of Individual Variants]<br />
** [http://statgen.us/files/201501/leal/lectures/power_analysis_rare_variants_2_5_15.pdf Power Analysis for Rare Variants - Aggregate Analysis]<br />
* Exercises<br />
** [http://statgen.us/files/2015/02/leal/exercises/Armitage_sample_size_Rockefeller_1_5_15.pdf Sample Size Calculation]<br />
** [http://statgen.us/files/2015/02/leal/exercises/GWAS_Data_Data_cleaning_linux_updated_2_5_15.pdf GWAS_Data_Data_cleaning_linux_updated_2_5_15.pdf]<br />
** [http://statgen.us/files/2015/02/leal/exercises/GWAS_Data_Controlling_for_Admixture_linux_2_5_15.pdf GWAS_Data_Controlling_for_Admixture_linux_2_5_15.pdf]<br />
** [http://statgen.us/files/2015/02/leal/exercises/GenABEL-Rockefeller_2_5_15.pdf Genome Wide Association using GenABEL]<br />
** [http://statgen.us/files/2015/02/leal/exercises/SEQPower-2015NYC.pdf SEQPower]<br />
** [http://statgen.us/files/2015/02/leal/exercises/VAT-2015NYC.pdf Variant Association Tools]<br />
** [http://statgen.us/files/2015/02/exercises/leal.tar.bz2 Download Data Sets] (decompress using "tar jxvf leal.tar.bz2")<br />
<br />
====Ben Neale====<br />
* Presentations<br />
* [http://statgen.us/files/201501/neale/Neale_Rockefeller_course_2015.pdf Neale lectures combined]<br />
* Exercises<br />
** [http://statgen.us/files/201501/exercises/neale.tar.bz2 Download Data Sets] (decompress using "tar jxvf neale.tar.bz2")<br />
<br />
====Shamil Sunyaev====<br />
* Presentations<br />
** [http://statgen.us/files/201501/sunyaev/handouts/Rockefeller_pop_gen_2014.pdf Population genetics]<br />
** [http://statgen.us/files/201501/sunyaev/handouts/Rockefeller_mutation_2015.pdf Mutation]<br />
** [http://statgen.us/files/201501/sunyaev/handouts/Rockefeller_complex_traits_2015.pdf Complex traits]<br />
* Exercises<br />
** [http://statgen.us/files/201501/sunyaev/handouts/Rockefeller_tutorial.pdf Annotation tutorial]<br />
<br />
<!--<br />
===Data-sets Used During the Course===<br />
* [http://statgen.us/files/201501/exercises/cordell.tar.bz2 Heather Cordell's Data Sets]<br />
* [http://statgen.us/files/201501/exercises/francioli.tar.bz2 Laurent Francioli's Data Sets]<br />
* [http://statgen.us/files/201501/exercises/leal.tar.bz2 Suzanne Leal's Data Sets]<br />
* [http://statgen.us/files/201501/exercises/neale.tar.bz2 Ben Neale's Data Sets]<br />
<br />
In order to obtain a particular data set, please follow the following steps:<br />
<br />
# Download the respective data archive file (''*.tar.bz2'') and place it into an appropriate directory.<br />
# At the command prompt (aka shell or terminal), make this directory the working directory by using the ''cd'' command.<br />
# Extract the data files by typing ''tar xjvf'' and adding the name of the archive file. The data files will then be in a corresponding subdirectory.<br />
# Change to this subdirectory (''cd'' command) and proceed with the exercise.<br />
--><br />
===Software===<br />
* [http://annovar.openbioinformatics.org/en/latest/ ANNOVAR]<br />
* [http://sites.stat.psu.edu/~yuzhang/ BEAM3]<br />
* [http://cassi.cas.org/ CASSI]<br />
* [http://annovar.openbioinformatics.org/en/latest/ GATK]<br />
* [http://www.genabel.org/ GenABEL]<br />
* [https://www.broadinstitute.org/igv/ IGV]<br />
* [https://cran.r-project.org/web/packages/ORMDR/index.html ORMDR]<br />
* [http://pngu.mgh.harvard.edu/~purcell/plink/ PLINK]<br />
* [https://www.r-project.org/ R]<br />
* [http://www.bioinformatics.org/spower/ SEQPower]<br />
* [http://varianttools.sourceforge.net/Association/HomePage VAT]<br />
<br />
===Links===<br />
* [http://ihg.helmholtz-muenchen.de/cgi-bin/hw/power2.pl Armitrage Test for Trends]<br />
* [http://agvgd.iarc.fr/ AlignGVGD]<br />
* [http://mendel.stanford.edu/SidowLab/downloads/gerp/index.html GERP]<br />
* [http://www.genmapp.org/ GenMAPP]<br />
* [http://mendel.stanford.edu/SidowLab/downloads/mapp/index.html MAPP]<br />
* [http://mips.helmholtz-muenchen.de/proj/ppi/ MIPS] .<br />
* [http://www.mutationtaster.org/ MutationTaster]<br />
* [http://mutpred.mutdb.org/ MutPred]<br />
* [http://www.rcsb.org/ PDB]<br />
* [http://pfam.sanger.ac.uk/ Pfam]<br />
* [http://genetics.bwh.harvard.edu/pph2 Polyphen-2]<br />
* [http://sift.jcvi.org/ SIFT]<br />
* [http://smart.embl.de/ SMART]<br />
* [http://www.rostlab.org/services/snap/ SNAP]<br />
* [http://snps3d.org/ SNPs3D]<br />
* [http://string.embl.de/ STRING]<br />
* [http://www.uniprot.org/ UniProt]<br />
<br />
<br />
This course is supported by a grant from the National Institute of Health (NIH) - National Human Genome Research Institute (NHGRI).</div>
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