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2015SeptMDC - Revision history
2026-04-05T19:49:08Z
Revision history for this page on the wiki
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Serveradmin: /* Course Slides */
2016-07-06T15:15:16Z
<p><span dir="auto"><span class="autocomment">Course Slides</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 15:15, 6 July 2016</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l46" >Line 46:</td>
<td colspan="2" class="diff-lineno">Line 46:</td></tr>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Course Slides===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Course Slides===</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::* [https://statgen.research.bcm.edu/files/2015/09/<del class="diffchange diffchange-inline">files</del>/berlin_book_lectures_only_2015_10_13.pdf download]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::* [https://statgen.research.bcm.edu/files/2015/09/<ins class="diffchange diffchange-inline">auth</ins>/berlin_book_lectures_only_2015_10_13.pdf download]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Data Sets===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Data Sets===</div></td></tr>
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Serveradmin
http://statgen.us/index.php?title=2015SeptMDC&diff=58&oldid=prev
Serveradmin: /* Link to Berlin hotel tax exemption form */
2016-06-07T17:51:48Z
<p><span dir="auto"><span class="autocomment">Link to Berlin hotel tax exemption form</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 17:51, 7 June 2016</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l8" >Line 8:</td>
<td colspan="2" class="diff-lineno">Line 8:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>=====[https://statgen.research.bcm.edu/files/201509/Berlin_NGS_schedule_8_26_15_2015.pdf Course Schedule]=====</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>=====[https://statgen.research.bcm.edu/files/201509/Berlin_NGS_schedule_8_26_15_2015.pdf Course Schedule]=====</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>=====[http://statgen.us/files/2015/09/<del class="diffchange diffchange-inline">BerlinHotelExemptionForm</del>.pdf Link to Berlin hotel tax exemption form]=====</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>=====[http://statgen.us/files/2015/09/<ins class="diffchange diffchange-inline">BerlinHotelTaxExemptionForm</ins>.pdf Link to Berlin hotel tax exemption form]=====</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>=====[https://www.mdc-berlin.de/directions Direction to the MDC Campus]=====</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>=====[https://www.mdc-berlin.de/directions Direction to the MDC Campus]=====</div></td></tr>
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Serveradmin
http://statgen.us/index.php?title=2015SeptMDC&diff=57&oldid=prev
Serveradmin: /* Link to Berlin hotel tax exemption form */
2016-06-07T17:51:04Z
<p><span dir="auto"><span class="autocomment">Link to Berlin hotel tax exemption form</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 17:51, 7 June 2016</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l8" >Line 8:</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>=====[https://statgen.research.bcm.edu/files/201509/Berlin_NGS_schedule_8_26_15_2015.pdf Course Schedule]=====</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>=====[https://statgen.research.bcm.edu/files/201509/Berlin_NGS_schedule_8_26_15_2015.pdf Course Schedule]=====</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>=====[<del class="diffchange diffchange-inline">[Media</del>:<del class="diffchange diffchange-inline">BerlinHotelExemption</del>.pdf<del class="diffchange diffchange-inline">|</del>Link to Berlin hotel tax exemption form<del class="diffchange diffchange-inline">]</del>]=====</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>=====[<ins class="diffchange diffchange-inline">http</ins>:<ins class="diffchange diffchange-inline">//statgen.us/files/2015/09/BerlinHotelExemptionForm</ins>.pdf Link to Berlin hotel tax exemption form]=====</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>=====[https://www.mdc-berlin.de/directions Direction to the MDC Campus]=====</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>=====[https://www.mdc-berlin.de/directions Direction to the MDC Campus]=====</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>=====Direction to the classroom=====</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>=====Direction to the classroom=====</div></td></tr>
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Serveradmin
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Serveradmin: /* Pictures from the Course */
2016-06-07T17:23:43Z
<p><span dir="auto"><span class="autocomment">Pictures from the Course</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 17:23, 7 June 2016</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l22" >Line 22:</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>[[File:2015JuneInstructors.jpg|none|300x400px]]</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>[[File:2015JuneInstructors.jpg|none|300x400px]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"><!--</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Pictures from the Course===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Pictures from the Course===</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>[[File:2015SeptemberCourseParticipants.jpg|none|400x267px]]</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>[[File:2015SeptemberCourseParticipants.jpg|none|400x267px]]</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">--></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Downloads for Course===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Downloads for Course===</div></td></tr>
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Serveradmin
http://statgen.us/index.php?title=2015SeptMDC&diff=51&oldid=prev
Serveradmin: /* Course Slides */
2016-06-07T16:59:58Z
<p><span dir="auto"><span class="autocomment">Course Slides</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 16:59, 7 June 2016</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Course Slides===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Course Slides===</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::* [https://statgen.research.bcm.edu/files/<del class="diffchange diffchange-inline">201509</del>/files/berlin_book_lectures_only_2015_10_13.pdf download]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::* [https://statgen.research.bcm.edu/files/<ins class="diffchange diffchange-inline">2015/09</ins>/files/berlin_book_lectures_only_2015_10_13.pdf download]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Data Sets===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Data Sets===</div></td></tr>
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Serveradmin
http://statgen.us/index.php?title=2015SeptMDC&diff=50&oldid=prev
Serveradmin: /* Exercise Output */
2016-06-07T16:58:33Z
<p><span dir="auto"><span class="autocomment">Exercise Output</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 16:58, 7 June 2016</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Exercise Output===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Exercise Output===</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::* [https://statgen.research.bcm.edu/files/<del class="diffchange diffchange-inline">201509</del>/files/VMT_screenResults_9_11_15.pdf Variant Mendelian Tools]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::* [https://statgen.research.bcm.edu/files/<ins class="diffchange diffchange-inline">2015/09</ins>/files/VMT_screenResults_9_11_15.pdf Variant Mendelian Tools]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Course Slides===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Course Slides===</div></td></tr>
</table>
Serveradmin
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Serveradmin: /* Downloads for Course */
2016-06-07T16:50:54Z
<p><span dir="auto"><span class="autocomment">Downloads for Course</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 16:50, 7 June 2016</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>::* Alohomora ([http://gmc.mdc-berlin.de/alohomora/alohomora_v0.33-linux.tar.gz Linux] [http://gmc.mdc-berlin.de/alohomora/alohomora_v0.33-win32.zip Windows])</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>::* Alohomora ([http://gmc.mdc-berlin.de/alohomora/alohomora_v0.33-linux.tar.gz Linux] [http://gmc.mdc-berlin.de/alohomora/alohomora_v0.33-win32.zip Windows])</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::* [https://statgen.research.bcm.edu/files/<del class="diffchange diffchange-inline">201509</del>/data/alohomora.zip Data Set]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::* [https://statgen.research.bcm.edu/files/<ins class="diffchange diffchange-inline">2015/09</ins>/data/alohomora.zip Data Set]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::* [https://statgen.research.bcm.edu/files/software/igv.jar <del class="diffchange diffchange-inline">IGV</del>.jar]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::* [https://statgen.research.bcm.edu/files/software/igv.jar <ins class="diffchange diffchange-inline">igv</ins>.jar]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::* [https://statgen.research.bcm.edu/files/<del class="diffchange diffchange-inline">201509</del>/data/IGVexercise_BAM.zip BAM File]</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::* [https://statgen.research.bcm.edu/files/<ins class="diffchange diffchange-inline">2015/09</ins>/data/IGVexercise_BAM.zip BAM File]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Commands for Computer Exercises===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Commands for Computer Exercises===</div></td></tr>
</table>
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Serveradmin: /* Course Instructors */
2016-06-07T15:41:07Z
<p><span dir="auto"><span class="autocomment">Course Instructors</span></span></p>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[File:2015JuneInstructors.jpg|none<ins class="diffchange diffchange-inline">|300x400px</ins>]]</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Pictures from the Course===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===Pictures from the Course===</div></td></tr>
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Serveradmin: Created page with "__NOTITLE__ ==Identifying Genes for Mendelian Traits using Next Generation Sequence Data== Sept 28-Oct 2, 2015, Max Delbrück Center (MDC) for Molecular Medicine, Berlin, Ger..."
2016-05-05T17:57:58Z
<p>Created page with "__NOTITLE__ ==Identifying Genes for Mendelian Traits using Next Generation Sequence Data== Sept 28-Oct 2, 2015, Max Delbrück Center (MDC) for Molecular Medicine, Berlin, Ger..."</p>
<p><b>New page</b></p><div>__NOTITLE__<br />
<br />
==Identifying Genes for Mendelian Traits using Next Generation Sequence Data==<br />
Sept 28-Oct 2, 2015, Max Delbrück Center (MDC) for Molecular Medicine, Berlin, Germany<br />
<br />
===General Information===<br />
Emphasis in this course is on strategies for gene mapping and variant/gene identification for Mendelian Traits. It will include theory as well as practical exercises. The exercises will be carried out using a variety of computer programs (e.g. Gemini, GeneHunter, GERP, Homozygosity Mapper, Integrative Genome Viewer, MERLIN, PhyloP, PolyPhen, SEQLinkage, Variant Mendelian Tools,) and with pencil and paper. TOPICS include: study design; linkage analysis and homozygosity mapping using genotype array and next generation sequence data (exome and whole genome), haplotype reconstruction, evaluating pedigree informativeness and power to detect linkage, identification of causal variants using filter approaches, variant annotation, evaluation of deleterious effects of variants and their functionality<br />
<br />
=====[https://statgen.research.bcm.edu/files/201509/Berlin_NGS_schedule_8_26_15_2015.pdf Course Schedule]=====<br />
=====[[Media:BerlinHotelExemption.pdf|Link to Berlin hotel tax exemption form]]=====<br />
=====[https://www.mdc-berlin.de/directions Direction to the MDC Campus]=====<br />
=====Direction to the classroom=====<br />
Location:<br />
<br />
:: MDC - communication center (Building C83 on the [http://www.campus-berlin-buch.de/en/location/ Campus Map])<br />
:: Room Axion 2&nbsp;<br />
The building is red and stands across the street from the campus bus stop and the blue bear.<br />
[[File:MDC_C.jpg|none|300x300px]]<br />
<br />
===Course Instructors===<br />
The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).<br />
<br />
[[File:2015JuneInstructors.jpg|none]]<br />
<br />
===Pictures from the Course===<br />
[[File:2015SeptemberCourseParticipants.jpg|none|400x267px]]<br />
<br />
===Downloads for Course===<br />
::* Alohomora ([http://gmc.mdc-berlin.de/alohomora/alohomora_v0.33-linux.tar.gz Linux] [http://gmc.mdc-berlin.de/alohomora/alohomora_v0.33-win32.zip Windows])<br />
::* [https://statgen.research.bcm.edu/files/201509/data/alohomora.zip Data Set]<br />
::* [https://statgen.research.bcm.edu/files/software/igv.jar IGV.jar]<br />
::* [https://statgen.research.bcm.edu/files/201509/data/IGVexercise_BAM.zip BAM File]<br />
<br />
===Commands for Computer Exercises===<br />
::* [https://statgen.research.bcm.edu/files/2015/09/commands/annotation.txt Functional Annotation]<br />
::* [https://statgen.research.bcm.edu/files/2015/09/commands/gemini.txt Gemini]<br />
::* [https://statgen.research.bcm.edu/files/2015/09/commands/rarepedsim.txt RarePedSim]<br />
::* [https://statgen.research.bcm.edu/files/2015/09/commands/seqlinkage.txt SEQLinkage]<br />
::* [https://statgen.research.bcm.edu/files/2015/09/commands/vat.txt Variant Assocaition Tools]<br />
::* [https://statgen.research.bcm.edu/files/2015/09/commands/vmt.txt Variant Mendelian Tools]<br />
<br />
===Exercise Output===<br />
::* [https://statgen.research.bcm.edu/files/201509/files/VMT_screenResults_9_11_15.pdf Variant Mendelian Tools]<br />
<br />
===Course Slides===<br />
::* [https://statgen.research.bcm.edu/files/201509/files/berlin_book_lectures_only_2015_10_13.pdf download]<br />
<br />
===Data Sets===<br />
::* [https://statgen.research.bcm.edu/files/2015/09/data/alohomora.zip Alohomora]<br />
::* [https://statgen.research.bcm.edu/files/2015/09/data/annotation.tar.gz Functional Annotation]<br />
::* [https://statgen.research.bcm.edu/files/2015/09/data/gemini.tar.gz Gemini]<br />
::* [https://statgen.research.bcm.edu/files/2015/09/data/genehunter.tar.gz GeneHunter]<br />
::* [https://statgen.research.bcm.edu/files/2015/09/data/IGVexercise_BAM.zip IGV BAM]<br />
::* [https://statgen.research.bcm.edu/files/2015/09/data/linkage.tar.gz Linkage]<br />
::* [https://statgen.research.bcm.edu/files/2015/09/data/merlin.tar.gz Merlin]<br />
::* [https://statgen.research.bcm.edu/files/2015/09/data/rarepedsim.tar.gz RarePedSim]<br />
::* [https://statgen.research.bcm.edu/files/2015/09/data/seqlinkage.tar.gz SEQLinkage]<br />
::* [https://statgen.research.bcm.edu/files/2015/09/data/slink.tar.gz SLINK]<br />
::* [https://statgen.research.bcm.edu/files/2015/09/data/superlink.zip Superlink]<br />
::* [https://statgen.research.bcm.edu/files/2015/09/data/vat.tar.gz Variant Association Tools]<br />
::* [https://statgen.research.bcm.edu/files/2015/09/data/vmt.tar.gz Variant Mendelian Tools]<br />
<br />
===Software Links===<br />
::* [http://gmc.mdc-berlin.de/alohomora/ Alohomora]<br />
::* [http://www.ncbi.nlm.nih.gov/CBBresearch/Schaffer/fastlink.html FASTLINK]<br />
::* [https://gemini.readthedocs.org/ Gemini]<br />
::* [http://www.broad.mit.edu/ftp/distribution/software/genehunter/ GeneHunter]<br />
::* [http://www.homozygositymapper.org/ Homozygosity Mapper]<br />
::* [https://www.broadinstitute.org/igv/ Integrative Genome Viewer (IGV)] [https://statgen.research.bcm.edu/files/igv.jar [download jar]]<br />
::* [http://www.jurgott.org/linkage/LinkagePC.html LINKAGE]<br />
::* [http://csg.sph.umich.edu/abecasis/Merlin/ MERLIN]<br />
::* [http://bioinformatics.org/simped/rare/ RarePedSim]<br />
::* [http://www.bioinformatics.org/seqlink/ SEQLinkage]<br />
::* [http://www.jurgott.org/linkage/SLINK.htm SLINK/MSIM]<br />
::* [http://bioinfo.cs.technion.ac.il/superlink-online/index-working2.shtml SUPERLINK]<br />
::* [http://varianttools.sourceforge.net/Association/HomePage Variant Association Tools]<br />
::* [http://statgen.research.bcm.edu/VMT Variant Mendelian Tools]<br />
<br />
===Databases===<br />
::* [http://exac.broadinstitute.org/ ExAC]<br />
<br />
===Bioinformatic Tools===<br />
::* [http://cadd.gs.washington.edu/score CADD]<br />
::* [http://fathmm.biocompute.org.uk/inherited.html FATHMM]<br />
::* [http://mendel.stanford.edu/SidowLab/downloads/gerp/ GERP]<br />
::* [http://www.genetics.wustl.edu/jflab/lrt_query.html LRT]<br />
::* [http://www.mutationtaster.org/ChrPos.html Mutation Taster]<br />
::* [http://genome.ucsc.edu/cgi-bin/hgGateway Nucleotide Conservation]<br />
::* [http://compgen.bscb.cornell.edu/phast/ PhyloP]<br />
::* [http://genetics.bwh.harvard.edu/pph2/bgi.shtml PolyPhen-2]<br />
::* [http://provean.jcvi.org/genome_submit_2.php?species=human PROVEAN and SIFT]<br />
::* [http://grch37.ensembl.org/Homo_sapiens/Tools/VEP VEP]</div>
Serveradmin